Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq12372 96.9 1e-15 seq6273 91.5 6e-14 >seq12372 Length=38393 Score = 96.9 bits (106), Expect = 1e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 10147 GCGTAAACAAGGTAATTTTGGTTGGAAACTTAGGGGCCG-ATCCTGAAGTCCGTTACCTG 10205 ||||||| || || || ||||||| | ||| || | | | || ||||||||||||||| Sbjct 37996 GCGTAAATAAAGTGATCCTGGTTGGGA-CTTGCGGACAGGACCCCGAAGTCCGTTACCTG 38054 Query 10206 CCGAGCGGCGACGCGGTTGCGAACATCCGTCTCGCGACGACCGATCGATACAAGGACAAG 10265 || | |||| ||||||| | ||| || | || || || | ||| | | | |||||| Sbjct 38055 CCAAACGGCAACGCGGTAACTAACCTCAGCCTGGCCACCAGCGAGCAGTGGACCGACAAG 38114 Query 10266 GCGAGCGGCGACATCAAGGAGGCGACTGAATGGCACCGCGTCTCGTTCTTCGGTCGGCTG 10325 | ||| | | ||| || || ||||||||||| ||||| ||||| | || Sbjct 38115 CAAACCGGGCAGAAGGTCGAGCGCACCGAGTGGCACCGCGTGTCGTTGTTCGGCAAGGTG 38174 Query 10326 GCTGAGATCGTCGACGAGCACCTGCGCAAGGG 10357 || ||||||| || |||| |||||||||| || Sbjct 38175 GCCGAGATCGCCGGCGAGTACCTGCGCAAAGG 38206 >seq6273 Length=5978 Score = 91.5 bits (100), Expect = 6e-14 Identities = 128/177 (72%), Gaps = 11/177 (6%) Strand=Plus/Plus Query 25305 CGCAACCTGATCCTGAAGGCCCGCCAGCTCGGCTTTACGACCCTCATCTGCATCATCTGG 25364 || |||||||||||||||||||| ||||| ||||| || || |||||||||| | Sbjct 2841 CGGAACCTGATCCTGAAGGCCCGGCAGCTTGGCTTCACCACTGAGTGCTGCATCATCCAG 2900 Query 25365 CTCGACCACGCGCTGTTCAA---CGCCAACAGCCGGTGCGGCATCATCGCGCAGGATCGG 25421 |||||| ||| |||||| | ||||| ||||| | ||||| || | | Sbjct 2901 CTCGACGCCGCTCTGTTCGAGTCGGCCAA------GTGCGCACTGATCGCTCACACCCTG 2954 Query 25422 GA-GACGGCCGAGGCGCTGTTTCGGGACAAGGTAAAGTTCGCCTACGACAACCTGCC 25477 | ||| ||| || |||||| ||||| || || |||| ||| |||||||||||||| Sbjct 2955 AACGAC-GCCAAGCGGCTGTTCCGGGAGAAAGTGAAGTACGCGTACGACAACCTGCC 3010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204221128407699