Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq2480 170 7e-38 seq14219 100 1e-16 seq3336 91.5 5e-14 seq8680 86.0 2e-12 >seq2480 Length=262 Score = 170 bits (188), Expect = 7e-38 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 5234 CGGTACGACGCCGCGCCTGTGGAATCTGCCGGTCGTTGAAACGCAGGCGATGACTGCGAA 5293 ||| || ||||||||||||||||| | || ||||| || ||||| |||||| | | Sbjct 1 CGGCACCACGCCGCGCCTGTGGAACCGTCCCGTCGTCTCCACCCAGGCCATGACTCAGGA 60 Query 5294 CGAATTCCTCGTCGGCGCCTTCTCGATGGCGGCTCAGATCTTCGACCGCATGGAGATCGA 5353 ||| ||| | |||||||| ||| | | | || ||||||| |||||||||||| ||||| Sbjct 61 CGACTTCTTGGTCGGCGCTTTCAAGCTAGGCGCGCAGATCTACGACCGCATGGAAATCGA 120 Query 5354 GGTTCTTCTGTCGACCGAGAACGTCGACGACTTCGAAAAGAACATGGTGTCGATCCGTGC 5413 ||| || | ||||||||||||| | | ||||||||||| ||||||| | | |||||||| Sbjct 121 GGTGCTGATCTCGACCGAGAACGACAAGGACTTCGAAAACAACATGGCGACCATCCGTGC 180 Query 5414 GGAGGAACGCCTCGCGCTTGCCGTCTATCGTCCGGAATCGTTTGTGACCGGT 5465 || || ||||| || | || |||| || |||| |||| || |||||| Sbjct 181 TGAAGAGCGCCTGGCCTTCGCGATCTACCGCGAGGAAGCGTTCGTTACCGGT 232 >seq14219 Length=2704 Score = 100 bits (110), Expect = 1e-16 Identities = 226/333 (68%), Gaps = 14/333 (4%) Strand=Plus/Minus Query 17227 TGGGACGGTACGTTCAAGGCAGCATGGACGAACAATCCGGCGTGGGTCTACTACGGCCTA 17286 ||||| || || ||||| | || | || ||||| ||||| ||| ||| ||||| | | Sbjct 1782 TGGGATGGCACATTCAAAGAGGCCTATACCAACAACCCGGCCTGGATCTTCTACGACTTG 1723 Query 17287 CTTCTCGACAAGCTCAACGGATTGGGTGACCGTGTCGATGCTTCGATGGTCGATAAGTGG 17346 | || || | |||| | || ||||| |||| || | ||||| ||| ||| Sbjct 1722 GTGCTGCACCCATACTACGGCCTCGGCGACCGCATCGACGCAACAATGGTTGATCGCTGG 1663 Query 17347 GCGCTGTACGCAATCGCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAGGGCGGCAAG 17406 |||| || ||||||| ||||||||| | | ||| | ||||| ||||| |||| | Sbjct 1662 TCGCTCTATCGGATCGCGCAGTACTGCGACCAGATGGTGCCGGACGGAAAGGGGGGCATG 1603 Query 17407 GAGCCGTGCTTCACCTGCAACTGCGTGCTTC-AGACGCGCGCGGACGC--ATTCAAGGTG 17463 ||||| |||| |||||||||| || |||| ||| || || || || || || ||| Sbjct 1602 GAGCCACGCTTTACCTGCAACTT-GTACTTCCAGAAGCAAGCTGAAGCTTATGCA--GTG 1546 Query 17464 GTACAGGATCTCGCGAGCGTCTTTCGCGGCATTTCGTACTGGGGCG----CCGGGTCGGT 17519 | ||||| || || |||| | |||| | | ||||||| || || | ||| | Sbjct 1545 CTCCAGGACCTGGCCTCGATCTTCCACGGCCTGGCCTACTGGGACGGAAGCCAGATCG-T 1487 Query 17520 GGTCGCGTCGGCCGATATGCCGTCCGATCCGGT 17552 |||| |||||||||||| ||| ||||| Sbjct 1486 GGTCAAC---GCCGATATGCCGGGCGACCCGGT 1457 >seq3336 Length=1417 Score = 91.5 bits (100), Expect = 5e-14 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2988 GGCGCCATGCAGGCCGGGAAAACGATGGTGCTGGAAGCCGGGATGAAGTACCAGGCCATC 3047 ||| ||| | | ||||| || | |||||| || || ||| |||||||||| | ||| Sbjct 1305 GGCTCCAAGAACGCCGGCAAGATCATGGTGGCCGAGGCTGGGTTGAAGTACCAAGGGATC 1246 Query 3048 ACGATGAATCCCGGTGATGTCCAGTTGCTGGAGACGCGGGCATTCAACATCGAGGAAATC 3107 ||||||||||||| | || |||| ||| || || | |||| ||| || || || Sbjct 1245 ACGATGAATCCCGAAGCCTCGCAAATGCTTGAGTCGAGGTCGTTCAGCATTGAAGAGATG 1186 Query 3108 TGCCGCTGGTATCGCGTTCCGCCGTTTATGGTCGGCCACA 3147 ||||| |||| || || ||||| || |||||||| |||| Sbjct 1185 TGCCGGTGGTTCCGGGTGCCGCCCTTCATGGTCGGTCACA 1146 >seq8680 Length=3046 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 25087 TTCGGCGCCCCGACGTGGTGATTGTCAAGGACGGATCTCTGCCGCCAACTCAGGACAACA 25146 |||| || ||||| |||||||| |||||||||| |||||||||||||||||||| Sbjct 1582 TTCGCCGGCCCGATGTGGTGATCGTCAAGGACGCCAGCAAGCCGCCAACTCAGGACAACA 1523 Query 25147 TCAAGAGCGTGGTGGAGATTAAATTCCCGCCT 25178 ||||| ||||||||||| || || || ||| Sbjct 1522 TCAAGCAAGTGGTGGAGATGAAGTTTCCACCT 1491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175382411737262