Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq29423 125 6e-24 >seq29423 Length=3049034 Score = 125 bits (138), Expect = 6e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| ||||||||| |||| ||||||||| Sbjct 2663938 GGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 2663879 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 |||||||| || | || || || |||||||||||||||| ||||| ||||| || ||| Sbjct 2663878 CCGCAGGCTGAGGACCATGGCCCCAACATCAAAGAGCACGTGAACTCCCTGGGGGAGAAG 2663819 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | || || ||| | ||||| Sbjct 2663818 CTGAAGACCCTCAGGCTGCGGCTGAGGCGCTG 2663787 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 129105 GGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACATG 129164 || || ||||| |||||||| ||||| ||||| |||||||||||||||||| | |||||| Sbjct 2661576 GGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAAGCCTACATG 2661517 Query 129165 ACTACTAA-ATAATAAAATGTAGTAT 129189 || || || || | ||| || ||||| Sbjct 2661516 ACAACAAAGATGAAAAACTGAAGTAT 2661491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447578503024560