Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq28753 114 3e-21 seq26395 100 7e-17 >seq28753 Length=697 Score = 114 bits (126), Expect = 3e-21 Identities = 274/406 (67%), Gaps = 14/406 (3%) Strand=Plus/Minus Query 33041 TAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTG 33100 |||||||| ||| |||||||| | |||| || | || | ||| ||||| || | Sbjct 519 TAACCCACGGTCGGTATCCATTCTGTTTTCAAGCTGCGAAATACGCGCTCCATCGGTGCG 460 Query 33101 TTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAAC 33160 ||||||||||||||||| || || ||||| ||||| | || ||||||||||||| | Sbjct 459 TTATCCCAGCAGTTTCCTCGTCGACTCATGCTCTGGCGCATGCGGTATCGCCACAACCGC 400 Query 33161 TGCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCG 33220 || || || | | ||| | ||| || ||||| || |||||| | || | Sbjct 399 TGGCGAAAGAGTCGGCTTGCATATTGCGATCCCTGGTCCGAGTGGAATAGCAGGTCCGAA 340 Query 33221 GGCTTACCACGGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGC-CTGCTGTCCGG 33279 ||| | ||||| || | ||||| |||||||||| || ||| | || ||| || Sbjct 339 GGCCTGCCACGCTGCTCGTAAGCCATATCCAGCGCTTAGATCACCAGCTCAGC-GTCTGG 281 Query 33280 CGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAAC--AGGTCGAGAACAACGGCG 33337 | ||||| ||||||||||| | | ||| || || || || || || || Sbjct 280 CTTTTCCGACAGCGCCCAGCCCAC--GATCCGACGCGTACAAAGATCCAGGACGACAGCC 223 Query 33338 AGGTACGCCCAGCGCTTACC---CGTCCAGATATAGGTCACATCACCGCACCACACCTGA 33394 ||||| ||| ||| || || ||| || | ||| ||| |||||||| || ||| Sbjct 222 AGGTAATGCCA---CTTTCCTTGCGCCCAAATGTGGGTGGTATCGCCGCACCAGACTTGA 166 Query 33395 TTTGGCTCGGTCACGGCGAACT-GCCTTTCAAGGTAGTTAGGGATA 33439 || ||| | | |||| |||||| || ||||| || ||| |||||| Sbjct 165 TTGGGCGCTGGCACGTCGAACTCGCGGTTCAATGT-GTTCGGGATA 121 >seq26395 Length=417 Score = 100 bits (110), Expect = 7e-17 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 38317 GTTGCTCACTTTCTGCGTACTGGTGCTGAAGAATGGCTTCACCGTCACCGGAGAGAGTGC 38376 ||| || || |||||||| || |||||| |||||||||||||||||||| ||||| || Sbjct 110 GTTACTGACCTTCTGCGTCCTAGTGCTGCGCAATGGCTTCACCGTCACCGGTGAGAGCGC 51 Query 38377 CTGTGCAAGCCCGGAAAACTTTGATGCAGAAATTGGCCGGAAGATTGCCC 38426 || || ||||| || ||||| || || || ||||| || ||||| |||| Sbjct 50 GTGCGCCAGCCCTGAGAACTTCGACGCGGAGATTGGTCGCAAGATCGCCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124770477498530