Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq17408 114 9e-21 seq26173 105 5e-18 >seq17408 Length=748846 Score = 114 bits (126), Expect = 9e-21 Identities = 116/150 (77%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| ||||| || || | |||||| Sbjct 535781 GCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATG 535840 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || || ||||||||||| ||||| || || ||||| ||| |||||||||||| || Sbjct 535841 TCTCCT-GACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAAAACTGGCA 535899 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || || ||||||||| || || || || Sbjct 535900 AAGGGCGTGGCACGGAGGTAGGGCCATGAG 535929 >seq26173 Length=4939203 Score = 105 bits (116), Expect = 5e-18 Identities = 166/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| | |||||| | || |||||||||||| | ||| || ||||||| |||||| Sbjct 2187561 AGCTGCATTTTCAGCAGCTCAGTGTGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 2187502 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 ||| | || || || | || || || | || || |||||||| ||||| || ||| Sbjct 2187501 ACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAG 2187442 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 ||||||||||| |||| || || | ||| ||| | || ||| ||||||| ||||| || Sbjct 2187441 CTGGCGATGTTGAAGGACACACCCAGGCCCCTGT-CTCCTGACTTCTGGTACAGCTG-CA 2187384 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAG 25646 || || || | || |||||| || || || | || | |||| | || || Sbjct 2187383 GGACAG-TCATGGTTCACCACGTAGAAGTGGCAAAGGGCATGGCACAGGGGCAG 2187331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340010281500549