Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq6053 192 4e-44 seq6890 163 2e-35 seq15544 147 1e-30 seq12372 107 1e-18 seq7504 102 5e-17 >seq6053 Length=4391 Score = 192 bits (212), Expect = 4e-44 Identities = 506/767 (66%), Gaps = 8/767 (1%) Strand=Plus/Minus Query 71865 ACGGGATTTACCGATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCATCATT 71924 || || | |||||| || | |||| || || ||||||||| |||| || ||||| Sbjct 1301 ACCGGTTATACCGACCTGGACGAGAAAACCAGCGGCCTTCAGCCGGCCGACCTGATCATC 1242 Query 71925 GTCGCCGCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCC 71984 || || | ||| || || ||||| || |||||||| || ||||| || || ||||| ||| Sbjct 1241 GTGGCGGGCCGGCCTTCGATGGGCAAAACCACGTTCGCCATGAACCTGGTGGAAAACGCC 1182 Query 71985 GCAGTTCGTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTG 72044 | | |||| ||| ||| |||| |||| ||| || || ||||| || | |||| Sbjct 1181 GTGTTGCGTACCGACAAGGCCGTGCTGGTGTTTTCGCTGGAAATGCCAGGCGAATCGCTG 1122 Query 72045 ATGATGCGCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAA 72104 | ||||| ||| | || || | || | || ||||| | || | || ||| Sbjct 1121 GTCATGCGTATGCTGTCCTCACTGGGTCGTATCGACCAGACCAAGGTGCGCTCCGGTCAA 1062 Query 72105 CTTAACGACGAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAG 72164 | | |||||| || ||| | || | | || || | ||| | || | | Sbjct 1061 TTGAGCGACGACGACTGGCCACGCCTCACGTCGGCGGTG---AACCTGCTAAACGACCGC 1005 Query 72165 AATATTTTTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGT 72224 || | || || |||||| | || | | | || | ||| | || | ||| | || Sbjct 1004 AAGTTGTTCATCGATGACACCGCCGGCATCAGCCCATCGGAGATGCGCGCGCGCACCCGA 945 Query 72225 CGTGTTTATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATG 72284 || | || | |||| | |||||| ||| |||| |||||||| || ||| Sbjct 944 CGCCTGGCACGCGAGCACGGTGAGATCGCCATGATCATGGTCGATTACCTGCAGCTGATG 885 Query 72285 C-GCGTCCCCGAGCTGCAAG--ATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCA 72341 | | ||| | || | | | ||||| ||| || ||| |||| || || || || Sbjct 884 CAGATTCCTGGTTCTTCGGGTGACAACCGCACGAACGAGATTTCCGAAATCTCCCGGTCG 825 Query 72342 CTGAAGGCGTTGGCGAAGGAATTACAAGTACC-GGTGGTGGCATTGTCACAACTTAATCG 72400 || || || |||| |||||||| ||| | || ||| | || | || || || || || Sbjct 824 CTCAAAGCCCTGGCCAAGGAATT-CAATTGCCCGGTCATTGCCCTCTCGCAGCTCAACCG 766 Query 72401 ATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGC 72460 || || || ||||| || ||||||| ||||| || || || || |||||||| || || Sbjct 765 CTCTCTGGAGCAGCGCCCGAACAAACGCCCGGTGAACTCCGACTTGCGTGAATCCGGTGC 706 Query 72461 AATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGA 72520 ||| ||||||||||| ||| | || ||||| |||| |||||||| || |||||||| || Sbjct 705 AATCGAGCAGGACGCCGACGTCATCATGTTCGTGTACCGCGACGAGGTGTATCACCCCGA 646 Query 72521 TAGCGAAATGAAGGGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGG 72580 | ||| || ||| | || || | || ||||| || || || || || |||||||| Sbjct 645 AACCGAGCACAAAGGCGTGGCGGAAATCATCATCGGCAAACAGCGTAACGGGCCAATTGG 586 Query 72581 CACGGTGAGATTGGCTTTTAACGGCCAATACTCACGGTTTGATAACT 72627 | ||| | |||| || | |||| | ||| | || || || |||| Sbjct 585 CTTTGTGCGCCTGGCGTTCATCGGCAAGTACACCCGTTTCGAGAACT 539 >seq6890 Length=6377 Score = 163 bits (180), Expect = 2e-35 Identities = 239/336 (71%), Gaps = 3/336 (1%) Strand=Plus/Plus Query 72251 GAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCG 72310 |||| |||| |||| || |||||||| || |||||| | | || | || || ||| | Sbjct 4707 GAGCCTGATCCTGATTGATTACCTGCAGCTCATGCGC-TGCGCGGGT--CAGGAAAACAG 4763 Query 72311 AACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGT 72370 | | || || || || ||||| | || || || | || |||||| | | Sbjct 4764 AGCCAACGAGATCAGCGCAATCTCTCGGGCCCTTAAAGCCCTTGCCAAGGAAATGAACTG 4823 Query 72371 ACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACC 72430 || ||||| || | || || || || ||||| || || || ||| || |||| || || Sbjct 4824 CCCAGTGGTCGCGCTATCGCAGCTCAACCGATCCCTAGAGCAACGTCCGAACAAGCGCCC 4883 Query 72431 GGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTT 72490 | | || ||||| ||||| ||||| |||||||| || |||||||||||| | || ||||| Sbjct 4884 GATCAACTCAGACTTACGGGAATCCGGAGCAATCGAACAGGACGCAGACGTCATCATGTT 4943 Query 72491 TCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAAT 72550 | || |||||||| || ||||||||| | | |||| || |||||||||||| | || Sbjct 4944 CGTTTACCGCGACGAGGTGTATCACCCGCAGACCGAATACAAAGGCATTGCCGAGATCAT 5003 Query 72551 TATCGGAAAGCAACGAAATGGCCCAATTGGCACGGT 72586 ||||| ||| ||| || ||||| | |||||| || Sbjct 5004 CATCGGCAAGGCACGCAACGGCCCTACTGGCACCGT 5039 >seq15544 Length=893 Score = 147 bits (162), Expect = 1e-30 Identities = 404/614 (66%), Gaps = 10/614 (2%) Strand=Plus/Plus Query 71874 ACCGATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCATCATTGTCGCCGCC 71933 ||||| ||| | | ||||| || || ||||||||||| | ||||| ||||||| Sbjct 285 ACCGACCTCGACGAAAAGACCAGCGGCCTGCAGCCGTCCGACTTGATCATCGTCGCCGGT 344 Query 71934 CGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCCGCAGTTCGT 71993 || || || ||||| |||||||| || |||||||| || || ||||| |||| | || Sbjct 345 CGTCCGTCCATGGGTAAGACCACCTTCGCGATGAACCTGGTGGAAAACGCCGTGTTACGC 404 Query 71994 AACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATGCGC 72053 | ||| ||| | || |||| | ||| |||||||| || | | |||| ||||| Sbjct 405 AGCGACAAGGCGGTGCTGGTGTACTCCCTCGAGATGCCAGGCGAATCGTTGATCATGCGT 464 Query 72054 TCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACTTAACGAC 72113 || | || |||| || | || ||||| | || | || || ||| | ||| Sbjct 465 ATGCTCTCGTCGCTTGGCCGTATCGACCAGACCAAGGTGCGTTCCGGCCAGCTTGAAGAC 524 Query 72114 GAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTT 72173 || || ||| |||| | | ||| || | ||| | || | | || | || Sbjct 525 GACGACTGGCCGCGCCTGACCTCCGC---GGTCAACCTGCTCAACGACCGCAAGCTGTTC 581 Query 72174 ATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTAT 72233 ||||||||| | | | | ||| | || | || | || | || || | Sbjct 582 ATTGATGACACTGCGGGTATCAGCCCGTCCGAAATGCGCGCGCGTACCCGGCGCCTGGTG 641 Query 72234 AAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCC 72293 || |||| | | | |||| ||||||||||||||||| | |||| ||||| Sbjct 642 CGTGAGCATGGCGACATCGCCCTGATCATGATCGACTACCTGCAGTTGATGCAGATCCCC 701 Query 72294 GAGCTGCAA----GATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGC 72349 | | | || || ||||| || || ||| | || || ||||| || ||||||| Sbjct 702 G-GTTCCAGTGGCGACAACCGTACCAACGAGATTTCTGAAATCTCTCGTTCCTTGAAGGC 760 Query 72350 GTTGGCGAAGGAATTACAAGTACC-GGTGGTGGCATTGTCACAACTTAATCGATCGCTTG 72408 |||| |||||||| ||| | || ||||||||| ||||| || || || || || || | Sbjct 761 CCTGGCCAAGGAATT-CAACTGCCCGGTGGTGGCGTTGTCCCAGCTCAACCGTTCCCTGG 819 Query 72409 AACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGC 72468 |||| ||| | |||| || ||||| || || || || || ||||| ||||| || |||| Sbjct 820 AACAACGTCCCAACAAGCGTCCGGTGAACTCCGACTTGCGGGAATCCGGAGCGATCGAGC 879 Query 72469 AGGACGCAGACCTG 72482 ||||||| ||| || Sbjct 880 AGGACGCCGACGTG 893 >seq12372 Length=38393 Score = 107 bits (118), Expect = 1e-18 Identities = 228/340 (67%), Gaps = 3/340 (1%) Strand=Plus/Plus Query 21060 CGCGGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTAT 21119 || || ||||| ||||| |||||| |||| || || || ||||| || || | || Sbjct 37992 CGTGGCGTAAATAAAGTGATCCTGGTTGGGACTTGCGGACAGGACCCCGAAGTCCGTTAC 38051 Query 21120 ATACCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCATGGCGCGAC 21179 | ||||| ||| |||||| | |||||| | || || | || ||| |||| Sbjct 38052 CTGCCAAACGGCAACGCGGTAACTAACCTCAGCCTGGCCACCAGCGAGCAGTGGACCGAC 38111 Query 21180 AAGCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAA 21239 |||||||| || || || |||| || || ||||| || |||||||| || Sbjct 38112 AAGCAAACCGGGCAGAAGGTCGAGCGCACCGAGTGGCACCGCGTGTCGTTGTTCGGCAAG 38171 Query 21240 CTTGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAA 21299 | || || || || | ||||| | || |||||||| || |||||||||||| || Sbjct 38172 GTGGCCGAGATCGCCGGCGAGTACCTGCGCAAAGGTTCCCAATGCTACATCGAAGGCAAG 38231 Query 21300 CTTAAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATC 21359 || ||||||| ||||| || | | ||| | | |||||||| || ||||| || Sbjct 38232 CTGCAAACCCGCGAGTGG---GAGAAGGACGGCATCAAGCGTTACACCACTGAAATCATT 38288 Query 21360 GTCAGCCAGGGCGGCACCATGCAAATGATCGGCGCTCGCC 21399 ||| | |||||||||||| || | |||| ||||| Sbjct 38289 GTCGACATCAACGGCACCATGCAGTTGCTAGGCGGTCGCC 38328 >seq7504 Length=9783 Score = 102 bits (112), Expect = 5e-17 Identities = 226/337 (67%), Gaps = 9/337 (3%) Strand=Plus/Plus Query 21060 CGCGGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTAT 21119 || || || ||||||||||| ||| | |||||| || || || || || || | || Sbjct 2807 CGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTAC 2866 Query 21120 ATACCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCATGGCGCGAC 21179 | || || || || || | || ||| | ||||| | || |||| |||| Sbjct 2867 CTGCCCAACGGTAATGCCGTGACCAACCTGAGCCTGGCAACCAGCGAGCAATGGACCGAC 2926 Query 21180 AAGCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAA 21239 ||||| ||||||| || |||| || |||||||| || ||||||| || Sbjct 2927 AAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAATGGCACCGTGTGTCGCTGTTCGGCAAG 2986 Query 21240 CTTGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAA 21299 ||||||| ||||| | ||||| | || |||||||| ||| |||||||||||| || Sbjct 2987 GTTGCTGAGATTGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAAGGCAAG 3046 Query 21300 CTTAAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATC 21359 || | |||||| ||||| || | | ||| | | || ||||| || ||||| ||| Sbjct 3047 CTGCAGACCCGTGAGTGG---GAAAAAGACGGCATCAAGCGCTACACCACTGAAATCATC 3103 Query 21360 GT---CAGCCAGGGCGGCACCATGCAAATGATCGGCG 21393 || || | | |||||||||||| || | |||| Sbjct 3104 GTTGACATCAA---CGGCACCATGCAGCTGCTGGGCG 3137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303121694610873