Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq29423 149 7e-31 >seq29423 Length=3049034 Score = 149 bits (164), Expect = 7e-31 Identities = 118/142 (83%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || ||||||||||||||||||||||| || | Sbjct 2663940 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 2663881 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| | || | |||| || |||||||||||||||||| ||||| |||| Sbjct 2663880 TGCCGCAGGCTGAGGACCATGGCCCCAACATCAAAGAGCACGTGAACTCCCTGGGGGAGA 2663821 Query 10260 ATCTAAAGACCCTAAGGCTTCG 10281 | || |||||||| ||||| || Sbjct 2663820 AGCTGAAGACCCTCAGGCTGCG 2663799 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || || || |||||||||||||||||||| |||||||| || || ||||| | Sbjct 2661590 AGCTCCAAGACAAGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 2661531 Query 10419 TAGAAGCATACATGAC 10434 ||||||| |||||||| Sbjct 2661530 TAGAAGCCTACATGAC 2661515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547169054282880