Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq8280 179 5e-40
>seq8280
Length=2548064
Score = 179 bits (198), Expect = 5e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| ||||| || |||||||||||| || |||| || ||||| ||||||
Sbjct 2052985 GTCTGGAACAACTGTTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 2053044
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||||||||||| ||||| || || || |||||||| |||||||||||||| |||||
Sbjct 2053045 CTGTTGTGTTCCCGCAGCCAAATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 2053104
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
| || || || ||||| | |||| | ||| || || | || || |||||||| |
Sbjct 2053105 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTTG 2053164
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
||||| ||||||||| | ||| |||||||||||||| |||| ||||
Sbjct 2053165 ACCTGAGTATCTTTGACTGTGGGAGGATACATTTCACCACCAATTATCT 2053213
Score = 102 bits (112), Expect = 1e-16
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| | | |||| | ||||| || || |||||| ||| ||| | ||
Sbjct 2054033 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 2054092
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
||| || || ||||| || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 2054093 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 2054152
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186
|| |||| | || | ||||| ||||||||||||
Sbjct 2054153 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAAC 2054191
Score = 96.9 bits (106), Expect = 5e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
||||||||||| || | || ||||| || || | ||| || ||||| |||| || | |
Sbjct 2054636 TCACCTTTGACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 2054695
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|||||||| || || || || |||||||||||| || |||||| | | || || |
Sbjct 2054696 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCGTAGTGCACATTATAAGTT 2054755
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| ||||| ||||||| || ||||| |||||
Sbjct 2054756 GGCGGGCTCTCAATCAGATGTGATCTCGCTGAA 2054788
Score = 86.0 bits (94), Expect = 9e-12
Identities = 182/269 (68%), Gaps = 12/269 (4%)
Strand=Plus/Plus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
||||| | |||||| ||||| | ||||| ||||| || | ||| || | |||||| |
Sbjct 2052419 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGAGTGAGGCCGTGTTCC 2052478
Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTT--GTTTT----ATCA 9435
| | | ||| ||||| || || || || || |||||| || | ||||
Sbjct 2052479 AATAAGAGGGAGTTGTTATAGACAAA-TTGCTG-----ATACTTGTAGTCCTGGCCATCA 2052532
Query 9436 ATCTCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAAT 9495
|||| ||| | || |||| || | ||||||||| || | |||||||||| | |
Sbjct 2052533 ATCTGAAAGGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCA 2052592
Query 9496 ATACGATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGA 9555
||||| |||||||||||||| ||| ||||| || || | |||| || |
Sbjct 2052593 ATACGGTTTTGGTACTGGAATTGTTGGTTAAAAAGCAGCTCTGGGTCAAACTTCAGTTTG 2052652
Query 9556 AAGTGGTAGCCGCTGAGCTGCTGAACATA 9584
||||| ||||| || || ||||| |||||
Sbjct 2052653 AAGTGATAGCCACTCAGGTGCTGTACATA 2052681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708252788472720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |