Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq8280 179 5e-40 >seq8280 Length=2548064 Score = 179 bits (198), Expect = 5e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| ||||| || |||||||||||| || |||| || ||||| |||||| Sbjct 2052985 GTCTGGAACAACTGTTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 2053044 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| ||||| || || || |||||||| |||||||||||||| ||||| Sbjct 2053045 CTGTTGTGTTCCCGCAGCCAAATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 2053104 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || ||||| | |||| | ||| || || | || || |||||||| | Sbjct 2053105 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTTG 2053164 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||||||||| |||| |||| Sbjct 2053165 ACCTGAGTATCTTTGACTGTGGGAGGATACATTTCACCACCAATTATCT 2053213 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| | | |||| | ||||| || || |||||| ||| ||| | || Sbjct 2054033 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 2054092 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 2054093 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 2054152 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 || |||| | || | ||||| |||||||||||| Sbjct 2054153 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAAC 2054191 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 ||||||||||| || | || ||||| || || | ||| || ||||| |||| || | | Sbjct 2054636 TCACCTTTGACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 2054695 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||| || || || || |||||||||||| || |||||| | | || || | Sbjct 2054696 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCGTAGTGCACATTATAAGTT 2054755 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || ||||| ||||||| || ||||| ||||| Sbjct 2054756 GGCGGGCTCTCAATCAGATGTGATCTCGCTGAA 2054788 Score = 86.0 bits (94), Expect = 9e-12 Identities = 182/269 (68%), Gaps = 12/269 (4%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | ||||| ||||| || | ||| || | |||||| | Sbjct 2052419 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGAGTGAGGCCGTGTTCC 2052478 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTT--GTTTT----ATCA 9435 | | | ||| ||||| || || || || || |||||| || | |||| Sbjct 2052479 AATAAGAGGGAGTTGTTATAGACAAA-TTGCTG-----ATACTTGTAGTCCTGGCCATCA 2052532 Query 9436 ATCTCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAAT 9495 |||| ||| | || |||| || | ||||||||| || | |||||||||| | | Sbjct 2052533 ATCTGAAAGGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCA 2052592 Query 9496 ATACGATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGA 9555 ||||| |||||||||||||| ||| ||||| || || | |||| || | Sbjct 2052593 ATACGGTTTTGGTACTGGAATTGTTGGTTAAAAAGCAGCTCTGGGTCAAACTTCAGTTTG 2052652 Query 9556 AAGTGGTAGCCGCTGAGCTGCTGAACATA 9584 ||||| ||||| || || ||||| ||||| Sbjct 2052653 AAGTGATAGCCACTCAGGTGCTGTACATA 2052681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708252788472720