Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_006820.1
Length=196280
Score E
Sequences producing significant alignments: (Bits) Value
seq17127 98.7 1e-15
seq152 87.8 2e-12
seq12812 86.0 8e-12
>seq17127
Length=3195
Score = 98.7 bits (108), Expect = 1e-15
Identities = 87/107 (81%), Gaps = 5/107 (5%)
Strand=Plus/Minus
Query 165218 TTGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAA--TTCG 165275
||||||| ||||||||||||||||||||||||| || |||| |||||| |||| |||
Sbjct 2667 TTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACTTAACGGTCG 2608
Query 165276 TGGAGGTTCAAGTCCTCTCTTGGGCACTATTATGAAAAAACACACTA 165322
|||| |||| |||| |||| ||||||| || |||||| |||||
Sbjct 2607 TGGAAGTTCGAGTCTTCTCCTGGGCAC---CATACAAAAACCCACTA 2564
Score = 86.0 bits (94), Expect = 8e-12
Identities = 71/86 (83%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 165219 TGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAA--TTCGT 165276
|||||| ||||||||||||||||||||||||| || |||| ||||| |||| |||
Sbjct 2839 TGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGGCTTAACGGCCGT 2780
Query 165277 GGAGGTTCAAGTCCTCTCTTGGGCAC 165302
||| |||| |||| |||| |||||||
Sbjct 2779 GGAAGTTCGAGTCTTCTCCTGGGCAC 2754
>seq152
Length=9724
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883
||||||||||| ||||||||||| || ||| ||||||| ||| ||||||| ||||||||
Sbjct 820 CGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 761
Query 164884 TCCCACTCCCGCTCCCAT 164901
||| ||||||| ||||
Sbjct 760 TCCGGCTCCCGCAACCAT 743
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883
||||||||||| ||||||||||| || ||| ||||||| ||| ||||||| ||||||||
Sbjct 1057 CGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 998
Query 164884 TCCCACTCCCGC 164895
||| |||||||
Sbjct 997 TCCGGCTCCCGC 986
>seq12812
Length=1778
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883
||||||||||| ||||||||||| || ||| ||||||| ||| ||||||| ||||||||
Sbjct 384 CGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 325
Query 164884 TCCCACTCCCGC 164895
||| |||||||
Sbjct 324 TCCGGCTCCCGC 313
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883
||||||||||| ||||||||||| || ||| ||||||| ||| ||||||| ||||||||
Sbjct 627 CGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 568
Query 164884 TCCCACTCCCGC 164895
||| |||||||
Sbjct 567 TCCGGCTCCCGC 556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627726915235200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |