Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq17127 98.7 1e-15 seq152 87.8 2e-12 seq12812 86.0 8e-12 >seq17127 Length=3195 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/107 (81%), Gaps = 5/107 (5%) Strand=Plus/Minus Query 165218 TTGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAA--TTCG 165275 ||||||| ||||||||||||||||||||||||| || |||| |||||| |||| ||| Sbjct 2667 TTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACTTAACGGTCG 2608 Query 165276 TGGAGGTTCAAGTCCTCTCTTGGGCACTATTATGAAAAAACACACTA 165322 |||| |||| |||| |||| ||||||| || |||||| ||||| Sbjct 2607 TGGAAGTTCGAGTCTTCTCCTGGGCAC---CATACAAAAACCCACTA 2564 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 165219 TGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAA--TTCGT 165276 |||||| ||||||||||||||||||||||||| || |||| ||||| |||| ||| Sbjct 2839 TGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGGCTTAACGGCCGT 2780 Query 165277 GGAGGTTCAAGTCCTCTCTTGGGCAC 165302 ||| |||| |||| |||| ||||||| Sbjct 2779 GGAAGTTCGAGTCTTCTCCTGGGCAC 2754 >seq152 Length=9724 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883 ||||||||||| ||||||||||| || ||| ||||||| ||| ||||||| |||||||| Sbjct 820 CGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 761 Query 164884 TCCCACTCCCGCTCCCAT 164901 ||| ||||||| |||| Sbjct 760 TCCGGCTCCCGCAACCAT 743 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883 ||||||||||| ||||||||||| || ||| ||||||| ||| ||||||| |||||||| Sbjct 1057 CGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 998 Query 164884 TCCCACTCCCGC 164895 ||| ||||||| Sbjct 997 TCCGGCTCCCGC 986 >seq12812 Length=1778 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883 ||||||||||| ||||||||||| || ||| ||||||| ||| ||||||| |||||||| Sbjct 384 CGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 325 Query 164884 TCCCACTCCCGC 164895 ||| ||||||| Sbjct 324 TCCGGCTCCCGC 313 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883 ||||||||||| ||||||||||| || ||| ||||||| ||| ||||||| |||||||| Sbjct 627 CGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 568 Query 164884 TCCCACTCCCGC 164895 ||| ||||||| Sbjct 567 TCCGGCTCCCGC 556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627726915235200