Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_006940.2 Length=40793 Score E Sequences producing significant alignments: (Bits) Value seq698 655 0.0 >seq698 Length=3433 Score = 655 bits (726), Expect = 0.0 Identities = 776/1044 (74%), Gaps = 8/1044 (1%) Strand=Plus/Plus Query 4122 ACGCCAGTTACCAGGAACGCAATTGGCACATGCTTACGGTCGACTACACGGTTCCAGTTG 4181 || ||||| |||||||| || || || | ||||| || || | || |||||||||||| Sbjct 191 ACACCAGTAACCAGGAAGGCGATCGGGATGTGCTTGCGCTCCATCACGCGGTTCCAGTTG 250 Query 4182 GCGGCGTTAGCCAGGTCCTGCCAGCTAGCGGAACG-GGCGATAGTCTCGGTGCCGTTGCC 4240 | ||| ||||| ||||||||| || || || |||| | ||||||||||||||||| Sbjct 251 GTGGCCAGCGCCAGATCCTGCCAGGAGGCAGAGCGCGGCG-TGGTCTCGGTGCCGTTGCC 309 Query 4241 GGTGATTACAGCGCTGGTGAAGCTGTAACCAAACGGATGCAGCAACCACGTTTTACGAGT 4300 |||||| || ||| ||||| || | ||| ||||||| ||| || || || | Sbjct 310 GGTGATGGTGGCCGACAGGAAACTGTAGCCGAGCGGGTGCAGCAGCCAGGTCTTGCGGCT 369 Query 4301 CCACAGGGTTTCAACACCACCACCATTAGCACGAGATGCTTCACGTTCGTATTCCAGCGG 4360 |||||| |||||| || ||||| ||| | |||| ||| || ||||| | || Sbjct 370 CCACAGCACTTCAACGCCGCCACCGTTACCGCGAGCCTCTTGGCGCTCGTAGGCGGTTGG 429 Query 4361 CATCTCAGGATTGCCTTCGCCGTAACCGATAGCACCCTGGCCGAAGATGATGGAGATGAA 4420 |||||| |||||| |||||||||||||||||||| || ||||| | | |||||| Sbjct 430 ATGCTCAGGGGAGCCTTCACCGTAACCGATAGCACCCTGACCAAAGATCACGCTGATGAA 489 Query 4421 TTTACGGCTAGTGTCCTGA-CCAACTACGGTCATGCTGTCATCGACGATGACGCGGTAAC 4479 || || | || || | || | |||||||| |||||||| | | |||||| | Sbjct 490 CTTGCG-CGAGCTGCCGGTGCCGATCACGGTCATCTGGTCATCGATCACCAGGCGGTAGC 548 Query 4480 CCTGGTAGGTGGCGAACATGGTGTTGTTCTCAGCATCACGGATGAAGTCGATAAGCTGGG 4539 |||||||||| |||| | ||||||||| ||||| ||||||||||||||||| | ||| Sbjct 549 CCTGGTAGGTCGCGATCTGGGTGTTGTTGTCAGCGTCACGGATGAAGTCGATCATCTGCT 608 Query 4540 CTTTACGGGCCTGT--GCGTATACGAAGCTGTGCATTGCGATAGCACCGAGAACCTCACC 4597 |||| || ||| | || |||||||| |||| || || | ||||| |||| || Sbjct 609 TCTTAC--GCATGTCGCCATACACGAAGCTATGCACCGCCATGACGCCGAGCACCTGGCC 666 Query 4598 GCCGTTGCCCATCAATGCATCACCCATAGTCTGGGTAGCATCGATGAATGCACCTGCGTC 4657 ||| | |||||||| ||||||||||| |||||||| || |||||||| || || || || Sbjct 667 GCCAGTCCCCATCAACGCATCACCCATGGTCTGGGTCGCGTCGATGAAGGCGCCCGCATC 726 Query 4658 GAAGCCTGAAGTTGCAGAAACGTCAACAACCATGTCGTTCTGCTCGTGATACGCATCAGT 4717 ||| || || || |||||||| | |||||||||||||| || |||||||||| Sbjct 727 GAAACCGCCAGCAGCGGAAACGTCGATCACCATGTCGTTCTGGGTATGGAACGCATCAGT 786 Query 4718 AGCGGATACGTTGTCGTTGTACAGGCCGAGTGCAGTTGCAATAAGGCGACGCTGCGCCTG 4777 ||| | |||||||||||| | || || | || || | || || ||||| ||||| Sbjct 787 TGCGCCGATGTTGTCGTTGTAGATACCCAGAGAGGTGGCCAACAGCCGGCGCTGAGCCTG 846 Query 4778 ACGCTGCCAGAAGTTATCCAGACGGGATGCGACGGACTGCAACGGATTCTGGCTGGTAAG 4837 |||||||||||||| ||||| || | || ||||| |||| ||| |||| |||||| || Sbjct 847 GCGCTGCCAGAAGTTGTCCAGGCGAGCAGCAACGGATTGCAGCGGGTTCTTGCTGGTCAG 906 Query 4838 TTCTACAGTCAGGTCTGCCTGGCCGAAACCTTCGTTCAGATATGCAACGCGGGCCATCAT 4897 || ||||||||||| |||||||| ||||||||||| || || ||||| ||||||| ||| Sbjct 907 CTCGACAGTCAGGTCGGCCTGGCCAAAACCTTCGTTGAGGTACGCAACACGGGCCAGCAT 966 Query 4898 TTCACCGGTCTGAATAGCGCGCGGGGTCGCGATGTCCTGGTATACGTCATTCGAGTAGTT 4957 || ||||| | ||| |||||| || | ||| ||| || || ||||||||||| Sbjct 967 ATCGCCGGTTTCAATGTTGCGCGGCTCTGCCACGTCGGCGTACACATCGTTCGAGTAGTT 1026 Query 4958 AGGCTCGATAGAAGTATCGATAGCTTTCCAGAACGGCAGGTTAGCGATGTTAGACGGTCC 5017 ||||||| || | ||||| | |||||| |||| | ||| |||||||| ||||| || Sbjct 1027 CGGCTCGACGGATGCGTCGATCGACTTCCAGTACGGGATGTTCGCGATGTTCGACGGGCC 1086 Query 5018 GCGGGCAATCTCGGCAGCATACGGAGTTGGGGTCAAAATTCCGGAGTTGAAAAACGCGGT 5077 ||| || ||||| ||||| ||||| |||||||| | ||| ||||| | ||| |||||||| Sbjct 1087 GCGTGCGATCTCAGCAGCGTACGGGGTTGGGGTGAGAATGCCGGACTCGAAGAACGCGGT 1146 Query 5078 TTTCTCTACCGGGTCTTCCGTCATATAGGACGCCAGTACAGGGATATTGCCAGTTACGAT 5137 || || |||||||||| |||| || || | ||| || ||||| || || || | ||| Sbjct 1147 CTTTTCAACCGGGTCTTGGGTCAGGTACGAGGTCAGCACCGGGATGTTACCGGTGATGAT 1206 Query 5138 GTTACCAATAGTGGTGATTGCCAT 5161 ||||| || |||||||| | ||| Sbjct 1207 ATTACCGATCGTGGTGATAGGCAT 1230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130368435084030