Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq28164 114 1e-20 seq20974 102 9e-17 >seq28164 Length=9734536 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||| | ||||| ||||| |||| | | Sbjct 1896758 AGCTCCTCCTCGGTTTCAAACTGACCAAGAACAGCTTCTAATGAGGTACAGAATGCCTGG 1896817 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| ||| ||||||||||| ||||| || ||| ||||||||||||| Sbjct 1896818 CTGAATGTCCAATTCCTTGTGTCTTCAGAAAAATAAAAACACTTACTTCCAAATCCAATC 1896877 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||| | |||||||| |||||||| Sbjct 1896878 CATTCTTTTGGGCAGGTAACATA 1896900 >seq20974 Length=1049469 Score = 102 bits (112), Expect = 9e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 ||||||||||||||||||| | ||| ||||||||| ||| | ||||| | | | Sbjct 234066 TTTAAAAATCAGCATCTAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAAC 234125 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 |||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 234126 GTTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 234185 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 234186 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 234216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531696596634120