Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq23530 168 8e-37 seq20687 140 4e-28 seq15277 138 1e-27 seq20974 107 2e-18 seq12120 91.5 2e-13 >seq23530 Length=2024980 Score = 168 bits (186), Expect = 8e-37 Identities = 274/393 (70%), Gaps = 1/393 (0%) Strand=Plus/Plus Query 33493 GCCCAATCGGCCTT-CTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33551 |||||||| ||||| ||| |||||||||||| | || || | ||| || ||||| | | Sbjct 954646 GCCCAATCTGCCTTTCTTCTTTACACAAGGCGTTGTCTCAACGGCGTTGAAGAGGAATTC 954705 Query 33552 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33611 |||| || |||||||| ||||| || | | ||||| |||||||| ||||| || Sbjct 954706 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAGTGAGGAGACTGTACATTTCAGAATGTAT 954765 Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671 |||||| ||||| || || || || ||||| | | || || |||||||| |||||| Sbjct 954766 GTTTTCCATGGCAATTTGGAAGCCATAGAAGTAACGGGCTTCCGTAATCTGAACTTCTTG 954825 Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 | || || ||| |||| |||||||| ||||| || ||||| |||||| | || |||| Sbjct 954826 GCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAGCCAG 954885 Query 33732 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 33791 ||| || | |||||| | || || || | || | ||| | | || || || Sbjct 954886 AACACGTGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 954945 Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851 || | || || || || ||||||| || || ||||| || || |||||| | ||| Sbjct 954946 GGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCCTATACACCTGCCA 955005 Query 33852 GATGTCATAATATTGGATTGGGAAAATAACAAA 33884 | ||| |||| || || || || ||||| Sbjct 955006 AACATCACGGTATTCCATAGGAAAGATGACAAA 955038 >seq20687 Length=1308170 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 999338 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 999279 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 999278 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 999219 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 999218 CTGTTTCTTACACCATA 999202 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 989763 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGGTCCCTGGCACG 989704 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 989703 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 989644 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| ||||| Sbjct 989643 AGGCTCCAGGTAAATGGC 989626 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || || | |||||| || || || || || || | Sbjct 994459 CATAGGTTTCATATGGGCCATACTCCTTGGCCAATTCACAGCTGGCTTCCAAGGCTCCAT 994400 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||||| |||||| | || || ||| | || ||||| || | Sbjct 994399 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 994340 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62752 | | | |||||||| || || || | ||||| || ||||| || || || | ||| Sbjct 994339 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 994282 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 ||||| | ||| | || | || || ||||| || | || ||||| || ||||||||| Sbjct 981583 CTAGAAAGTTGTGGGCGGTTGGTGCCAGCATTGAAGAGAGTGGGAGAGGCATGCGTAAAC 981524 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 || | |||||||| || ||||| || |||||||| | || ||||| || || || Sbjct 981523 CACCTCTCAGAAAGAAGGTTGTATGTTTCAATAGCAGCATCAATATCTTCTTTGTGGATG 981464 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63749 || || | || | ||| ||||| ||||| ||||||||| Sbjct 981463 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 981425 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63456 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63515 || ||||| ||| | || |||||| ||| | | | ||| |||||||| ||| || Sbjct 986184 ATGTAGCTGCCAGTAGCTCGAATACAACTCACAGCAACACCAATTCCCCCAGCCGACTTG 986125 Query 63516 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATG 63575 || || ||||| || | |||| |||||||| ||||| || ||||||||||| |||| Sbjct 986124 GATATCAATGCACACTGCTTTAGAGTGTCATAAATACCTTCAATGCTATCATCTTTCATA 986065 Query 63576 TTAAGTAGAAAACAGCTA 63593 | || || ||||||||| Sbjct 986064 CTCAGAAGGAAACAGCTA 986047 >seq15277 Length=4737824 Score = 138 bits (152), Expect = 1e-27 Identities = 103/121 (85%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| ||||| |||||||| ||||| |||||||| || || || |||| Sbjct 3367420 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 3367479 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||||||||| ||||| ||||||| Sbjct 3367480 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3367539 Query 33446 C 33446 | Sbjct 3367540 C 3367540 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||| || || | |||||||||||||| ||||| ||||| || ||||| Sbjct 3369376 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTCTCCATGGC 3369435 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | || || |||||||| |||||| | ||| || || Sbjct 3369436 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTGGCTAAACCGCTC 3369495 Query 33684 CGCC 33687 | || Sbjct 3369496 CACC 3369499 >seq20974 Length=1049469 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| || ||||| ||||| || || | || || Sbjct 250905 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 250964 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 250965 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 251023 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| ||||| ||||||||||||||||| || || | || |||| Sbjct 255295 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAA 255354 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 33803 |||| || || |||| | | || || ||||| | | || |||||| |||| ||| || Sbjct 255355 AATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCTTTTGATAAATCAAC 255412 >seq12120 Length=1614126 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/257 (68%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 1445337 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 1445280 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || | |||||| ||| |||| |||| | | || ||||| || ||| ||| || | || Sbjct 1445279 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAGTTCGATCACCCTTTTTG 1445220 Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224 || | | | | ||| ||| ||||| || | || || | ||||| ||||||||| Sbjct 1445219 ACTTCGAGCTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 1445160 Query 31225 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31281 || ||||| ||||| |||||| ||| || | |||| | || ||||| | ||| Sbjct 1445159 TCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 1445100 Query 31282 GCTATTCTACCATAGCA 31298 |||| ||| |||||||| Sbjct 1445099 GCTACTCTCCCATAGCA 1445083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622708042783080