Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq2102 192 6e-44 seq14167 98.7 1e-15 seq1238 95.1 1e-14 seq17670 93.3 5e-14 >seq2102 Length=3392 Score = 192 bits (212), Expect = 6e-44 Identities = 229/308 (74%), Gaps = 2/308 (1%) Strand=Plus/Minus Query 6915 TTGCTTTATGC-CCATGTGTTAAATGACCACCGCAATCCAAAGACATCGCCAATACTGAA 6973 || |||| ||| ||||| |||||||| ||||| | | | | ||| | || || | | Sbjct 2323 TTACTTT-TGCACCATGGGTTAAATGGCCACCATGAGCAAGACTCATACCTAAAACGGTA 2265 Query 6974 TCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGT 7033 ||||| ||| ||||||| || |||||||||| ||||||||||||||| | |||||| Sbjct 2264 TCGCCCGGATTCAGCAAAGCCAGGTAAACAGCAGAGTTTGCCTGTGAACCTGCATGGGGC 2205 Query 7034 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7093 ||||||||||| | | || ||| |||||||||||||| |||||||||| | || Sbjct 2204 TGAACGTTTGCATAGTCAGCACCAAAAAGTTCTTTAGCACGATCAATTGCCAATTGTTCA 2145 Query 7094 ATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATAC 7153 || |||| | | ||||||| ||||| || |||||||||||||| || || ||||| Sbjct 2144 ATAACATCAACATGCTCACAACCACCGTAGTAGCGTTTGCCTGGATAGCCTTCTGCATAT 2085 Query 7154 TTGTTGGTAAAAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGAT 7213 ||||| || | | ||||||||||||| |||||| | || ||||||||| || Sbjct 2084 TTGTTAGTGAGTTTTGAACCTTGCGCTTCCATAACCGCTGGAGAACAATAGTTTTCAGAA 2025 Query 7214 GCAATCAA 7221 ||||| || Sbjct 2024 GCAATTAA 2017 Score = 96.9 bits (106), Expect = 4e-15 Identities = 181/264 (69%), Gaps = 8/264 (3%) Strand=Plus/Minus Query 6479 AAGCAAATAGCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGAATACCCGGGAAG 6538 ||||| || || || ||||| || |||||||||| ||||| || || |||| ||||| Sbjct 2750 AAGCAGATTGCTTTGGCCGCAATCGCATGCATTAATGGACCGCCTTGGTTACCTGGGAAT 2691 Query 6539 ATAGCAGAATTTACTTTCTTGGCGATATCAGCAT---CGTTAGTAAGAATGAGACCACCA 6595 | |||||| | | ||| || | || || ||| | || | ||||| |||||| | Sbjct 2690 ACAGCAGACTGAAGTTTTTTCTCAATCTCTTCATTCGCTTTTGCCAGAATCAGACCAGAA 2631 Query 6596 CGAGGGCCGCGCAAAGTTTTATGAGTTGTAGAAGTAACAACGTCAGCACCCCATTTG-AG 6654 || |||||||||||||||||||| || || | || || |||||| ||||| | Sbjct 2630 CGTGGGCCGCGCAAAGTTTTATGGGTAGTGGTTGTGGTTACATCAGCA----ATTTGAAC 2575 Query 6655 TGGATTAGCATGAAGTTTTGATGCGACGAATCCAGCAAAGTGGGCCATATCGACCATCAA 6714 || || | | | || ||| || | || |||| |||||||||||| || | || Sbjct 2574 CGGGTTCGGGTATACACCTGCTGCCACCAGACCTGCAACGTGGGCCATATCAACAAACAG 2515 Query 6715 CTTCGCGCCAGACATATCAGCAAT 6738 | || ||| |||||||||| Sbjct 2514 ATAAGCACCAACTTTATCAGCAAT 2491 >seq14167 Length=1194 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 6985 CAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGC 7044 ||||| || |||| || || ||| || || ||||||| || || || ||||| || Sbjct 136 CAGCAGGGCCAGGTACACGGCGCTGTTGGCTTGGGAACCGGCGTGTGGCTGGACGTTGGC 195 Query 7045 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGC 7104 | ||| | | ||||| ||||| ||||| || || |||| | ||| | | | ||| | Sbjct 196 GTAATCGGCGCCGAACAGCTCTTTGGCACGGTCGATGGCCAACTGCTCAACCACGTCGAC 255 Query 7105 TTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAA 7164 | | ||||| ||||| || || |||||||| || || || || ||||||||||| | Sbjct 256 GTACTCGCAACCACCGTAGTAGCGCTTGCCTGGGTAGCCTTCGGCGTACTTGTTGGTCAG 315 Query 7165 AATAGAACCTTGCGCTTTCATAAC 7188 || |||||||| || | ||| || Sbjct 316 AACCGAACCTTGAGCCTCCATCAC 339 >seq1238 Length=1499 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 6985 CAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGC 7044 ||||| ||| || | || || ||||| ||||| ||||| |||||||| ||||| || Sbjct 921 CAGCAGCGCCAGGAACACCGCCTGGTTGGCCTGGTTGCCGGAGTGGGGTTGCACGTTGGC 862 Query 7045 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGC 7104 | |||||| ||||| || ||||| || ||||||| ||||| | |||| | Sbjct 861 ATAGCTGCAACCGAACAGCAGCCGGGCCCGCTCGATGGCCAGGTCCTCGACCACATCCAC 802 Query 7105 TTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAA 7164 || |||| | | ||||||| ||| || || || |||||||| ||||||||||| | Sbjct 801 ATTGCCACAGCTGGCGTAATAGCGTCGCCCCGGGTACCCCTCAGCGTACTTGTTGGTCAG 742 Query 7165 AATAGAACCTTGCGC 7179 | || ||||| || Sbjct 741 CACCGACCCTTGGGC 727 >seq17670 Length=18040 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 6985 CAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGC 7044 ||||| || |||| ||||| ||| ||||| || |||| || || || ||||| || Sbjct 13334 CAGCAGGGCCAGGTAGACAGCGGCGTTGGCCTGGGAGCCGGCGTGCGGCTGGACGTTGGC 13393 Query 7045 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGC 7104 | | | | || ||||||| || || || || || ||||| | ||||| | ||| | Sbjct 13394 GTAGTCGGCACCGAACAGTTGCTTGGCGCGGTCGATGGCCAGCTGCTCGACGACGTCGAC 13453 Query 7105 TTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAA 7164 | | | || || || || || || ||||||||||| || || || ||||||||||| | Sbjct 13454 GTATTCGCAGCCACCATAGTAGCGCTTGCCTGGATAGCCTTCGGCGTACTTGTTGGTCAG 13513 Query 7165 AATAGAACCTTGCGCTTTCATAAC 7188 | ||||| || |||| ||| || Sbjct 13514 TACCGAACCCTGGGCTTCCATGAC 13537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553141160636040