Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_007022.1
Length=172963
Score E
Sequences producing significant alignments: (Bits) Value
seq2102 192 6e-44
seq14167 98.7 1e-15
seq1238 95.1 1e-14
seq17670 93.3 5e-14
>seq2102
Length=3392
Score = 192 bits (212), Expect = 6e-44
Identities = 229/308 (74%), Gaps = 2/308 (1%)
Strand=Plus/Minus
Query 6915 TTGCTTTATGC-CCATGTGTTAAATGACCACCGCAATCCAAAGACATCGCCAATACTGAA 6973
|| |||| ||| ||||| |||||||| ||||| | | | | ||| | || || | |
Sbjct 2323 TTACTTT-TGCACCATGGGTTAAATGGCCACCATGAGCAAGACTCATACCTAAAACGGTA 2265
Query 6974 TCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGT 7033
||||| ||| ||||||| || |||||||||| ||||||||||||||| | ||||||
Sbjct 2264 TCGCCCGGATTCAGCAAAGCCAGGTAAACAGCAGAGTTTGCCTGTGAACCTGCATGGGGC 2205
Query 7034 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7093
||||||||||| | | || ||| |||||||||||||| |||||||||| | ||
Sbjct 2204 TGAACGTTTGCATAGTCAGCACCAAAAAGTTCTTTAGCACGATCAATTGCCAATTGTTCA 2145
Query 7094 ATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATAC 7153
|| |||| | | ||||||| ||||| || |||||||||||||| || || |||||
Sbjct 2144 ATAACATCAACATGCTCACAACCACCGTAGTAGCGTTTGCCTGGATAGCCTTCTGCATAT 2085
Query 7154 TTGTTGGTAAAAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGAT 7213
||||| || | | ||||||||||||| |||||| | || ||||||||| ||
Sbjct 2084 TTGTTAGTGAGTTTTGAACCTTGCGCTTCCATAACCGCTGGAGAACAATAGTTTTCAGAA 2025
Query 7214 GCAATCAA 7221
||||| ||
Sbjct 2024 GCAATTAA 2017
Score = 96.9 bits (106), Expect = 4e-15
Identities = 181/264 (69%), Gaps = 8/264 (3%)
Strand=Plus/Minus
Query 6479 AAGCAAATAGCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGAATACCCGGGAAG 6538
||||| || || || ||||| || |||||||||| ||||| || || |||| |||||
Sbjct 2750 AAGCAGATTGCTTTGGCCGCAATCGCATGCATTAATGGACCGCCTTGGTTACCTGGGAAT 2691
Query 6539 ATAGCAGAATTTACTTTCTTGGCGATATCAGCAT---CGTTAGTAAGAATGAGACCACCA 6595
| |||||| | | ||| || | || || ||| | || | ||||| |||||| |
Sbjct 2690 ACAGCAGACTGAAGTTTTTTCTCAATCTCTTCATTCGCTTTTGCCAGAATCAGACCAGAA 2631
Query 6596 CGAGGGCCGCGCAAAGTTTTATGAGTTGTAGAAGTAACAACGTCAGCACCCCATTTG-AG 6654
|| |||||||||||||||||||| || || | || || |||||| ||||| |
Sbjct 2630 CGTGGGCCGCGCAAAGTTTTATGGGTAGTGGTTGTGGTTACATCAGCA----ATTTGAAC 2575
Query 6655 TGGATTAGCATGAAGTTTTGATGCGACGAATCCAGCAAAGTGGGCCATATCGACCATCAA 6714
|| || | | | || ||| || | || |||| |||||||||||| || | ||
Sbjct 2574 CGGGTTCGGGTATACACCTGCTGCCACCAGACCTGCAACGTGGGCCATATCAACAAACAG 2515
Query 6715 CTTCGCGCCAGACATATCAGCAAT 6738
| || ||| ||||||||||
Sbjct 2514 ATAAGCACCAACTTTATCAGCAAT 2491
>seq14167
Length=1194
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 6985 CAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGC 7044
||||| || |||| || || ||| || || ||||||| || || || ||||| ||
Sbjct 136 CAGCAGGGCCAGGTACACGGCGCTGTTGGCTTGGGAACCGGCGTGTGGCTGGACGTTGGC 195
Query 7045 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGC 7104
| ||| | | ||||| ||||| ||||| || || |||| | ||| | | | ||| |
Sbjct 196 GTAATCGGCGCCGAACAGCTCTTTGGCACGGTCGATGGCCAACTGCTCAACCACGTCGAC 255
Query 7105 TTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAA 7164
| | ||||| ||||| || || |||||||| || || || || ||||||||||| |
Sbjct 256 GTACTCGCAACCACCGTAGTAGCGCTTGCCTGGGTAGCCTTCGGCGTACTTGTTGGTCAG 315
Query 7165 AATAGAACCTTGCGCTTTCATAAC 7188
|| |||||||| || | ||| ||
Sbjct 316 AACCGAACCTTGAGCCTCCATCAC 339
>seq1238
Length=1499
Score = 95.1 bits (104), Expect = 1e-14
Identities = 138/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 6985 CAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGC 7044
||||| ||| || | || || ||||| ||||| ||||| |||||||| ||||| ||
Sbjct 921 CAGCAGCGCCAGGAACACCGCCTGGTTGGCCTGGTTGCCGGAGTGGGGTTGCACGTTGGC 862
Query 7045 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGC 7104
| |||||| ||||| || ||||| || ||||||| ||||| | |||| |
Sbjct 861 ATAGCTGCAACCGAACAGCAGCCGGGCCCGCTCGATGGCCAGGTCCTCGACCACATCCAC 802
Query 7105 TTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAA 7164
|| |||| | | ||||||| ||| || || || |||||||| ||||||||||| |
Sbjct 801 ATTGCCACAGCTGGCGTAATAGCGTCGCCCCGGGTACCCCTCAGCGTACTTGTTGGTCAG 742
Query 7165 AATAGAACCTTGCGC 7179
| || ||||| ||
Sbjct 741 CACCGACCCTTGGGC 727
>seq17670
Length=18040
Score = 93.3 bits (102), Expect = 5e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 6985 CAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGC 7044
||||| || |||| ||||| ||| ||||| || |||| || || || ||||| ||
Sbjct 13334 CAGCAGGGCCAGGTAGACAGCGGCGTTGGCCTGGGAGCCGGCGTGCGGCTGGACGTTGGC 13393
Query 7045 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGC 7104
| | | | || ||||||| || || || || || ||||| | ||||| | ||| |
Sbjct 13394 GTAGTCGGCACCGAACAGTTGCTTGGCGCGGTCGATGGCCAGCTGCTCGACGACGTCGAC 13453
Query 7105 TTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAA 7164
| | | || || || || || || ||||||||||| || || || ||||||||||| |
Sbjct 13454 GTATTCGCAGCCACCATAGTAGCGCTTGCCTGGATAGCCTTCGGCGTACTTGTTGGTCAG 13513
Query 7165 AATAGAACCTTGCGCTTTCATAAC 7188
| ||||| || |||| ||| ||
Sbjct 13514 TACCGAACCCTGGGCTTCCATGAC 13537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 553141160636040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |