Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq3790 260 4e-65 seq14071 251 2e-62 seq3336 136 1e-27 seq14219 113 1e-20 seq4948 113 1e-20 seq18521 109 2e-19 >seq3790 Length=1662 Score = 260 bits (288), Expect = 4e-65 Identities = 312/421 (74%), Gaps = 2/421 (0%) Strand=Plus/Plus Query 43927 CATCCCCGCCGCCGGTTTGAAGCTGTTGTCCGCGACCTCCTTCGTCGGGGCGAGAATCAG 43986 |||||| || || || ||||| ||||||||| |||||||| ||||| || |||||||| Sbjct 1 CATCCCGGCAGCTGGCTTGAAAGCGTTGTCCGCAACCTCCTTGGTCGGCGCCAGAATCAG 60 Query 43987 GTGCTCTTCTTCCTCGCGCCAACACAAAATGACCGCCGTCAGCATGATTCCGGCCGCGAT 44046 ||||| |||||||||||||| || | ||| | || || |||||||| ||||| ||||| Sbjct 61 ATGCTCCTCTTCCTCGCGCCAGCAGAGAATCAAGGCAGTGAGCATGATGCCGGCTGCGAT 120 Query 44047 CGTCGATTTCGTATTCTTCTTGCTGATCAGCAGAAAGAACTCGCGGATCAGTTGCTTGCC 44106 || ||||| ||||||||||||||||| | |||||||||||||| ||||||||| Sbjct 121 GGTGCTCTTCGTGTTCTTCTTGCTGATCAGTAAGCCGAACTCGCGGATCATTTGCTTGCC 180 Query 44107 GGTTTCGGCATCGTAGGCACCGAAAATGGCCGCG-ACGAAATCGAAGACCCACTGCTCGC 44165 ||| || |||||||| || ||||| || || ||| ||| | |||| ||||||| |||| Sbjct 181 GGTCTCAGCATCGTAAGCGCCGAAGAT-GCAGCGAACGTAGTCGAGTACCCACTCATCGC 239 Query 44166 TGCATTCGCCGAAGGTCGGCTTTCCCGGTAGGTCACAGACCCGCAGTTCCTTGAAGATCG 44225 || ||| | | | ||||| ||||| || || || ||||| |||||||| || Sbjct 240 AACAGTCGGCCATCCTTGGCTTGCCCGGCAGATCTGGAACGCGCAGCTCCTTGAATATTT 299 Query 44226 CGACTGCCTGCTCAGCCTGATCCGGGAAAATCGGCGGCGGAATGATCGACTCGCGCGCAA 44285 | ||| |||| |||| || ||||| || || || || ||||| | | | | Sbjct 300 GTAGTGCACGCTCCGCCTCTTCTATAAAAATAGGGGGAGGGATAATCGATTTATGGTCGA 359 Query 44286 TCAGCCGCCTTTCCCAGTCGGGACATGCCGTTGTCCACTCCATCACTCGACCTTCTTGCC 44345 |||| ||| |||||||| |||||||| || | ||||||||| | |||| ||| || Sbjct 360 TCAGGCGCTGCTCCCAGTCAGGACATGCGGTCGACCACTCCATAGTTAAACCTGCTTACC 419 Query 44346 G 44346 | Sbjct 420 G 420 >seq14071 Length=4236 Score = 251 bits (278), Expect = 2e-62 Identities = 841/1289 (65%), Gaps = 54/1289 (4%) Strand=Plus/Minus Query 42896 GTCTTGATGGCTCCCGAGAGCTTCCAGCCTTGCGAGATACCAATCACCTTGTCTTCCGGA 42955 || ||||||||||| || ||||||||| ||||| || | || || |||| Sbjct 1439 GTTTTGATGGCTCCGCCCAGGCGCCAGCCTTGTGAGATGCCGTCGATTTTCTCGCGCGGA 1380 Query 42956 ACCCGCGCTGCCGCGAGTGCGTCGAGGATAGCCCCGATACCGGCCGGGTCGACGCCGGCC 43015 | | | || | || ||||||||||| ||||||| ||||||||||| | ||| || Sbjct 1379 ATACCCATGGCTTCCAGCGCGTCGAGGATCGCCCCGACGCCGGCCGGGTCCAGCCCGACC 1320 Query 43016 TTGTATAGAAGCCCAGCGCGCTCGATGCGAGCGACATACTCTGCCGCCTGTACAACGTCC 43075 |||| || || || || |||| | | || || | |||| || ||| ||| Sbjct 1319 TTGTCCAGCAGGCCGGCCTGCTCAACCTGCGCCACCAGTTGTGCCACCGCCTCAATGTCG 1260 Query 43076 TCGCCGATCCGAGAGACGATCGTCAGATCCCCCGCCTTCTCGAAATCGTGAA-GCGCCGG 43134 |||||||| || || | ||||| | ||| ||||| |||| ||| | | |||| || Sbjct 1259 TCGCCGATGCGTTCAACCAGGGTCAGGTGCCCATCCTTCGCGAAGTCGCGGATGCGC-GG 1201 Query 43135 CGCAATCT-CTTTGCGGCGCTCCAGCACGGACGGGTGCGCCCAAGNNNNNNNNNNNNNNN 43193 ||| ||| |||| || |||||||| || || ||||| ||||| | Sbjct 1200 CGCT-TCTGCTTTACGCCGCTCCAGTACTGATGGGTGGGCCCAGGCATGGGTCCAGGTCA 1142 Query 43194 NCCAGTTCCG----CCCACCTCTTACGCGGCCCACCGCACTGAGCCCCAATAAGTCGTCA 43249 ||| ||| ||| |||| || || | || | || | ||||| || Sbjct 1141 GCCAACGCCGTGTGCCCTGCTCT----CGACCGAGTGCTGCAAAGCCAAGCAAGTCATCC 1086 Query 43250 AGGCCGCCGCCATCGATACCAGCGGCGATCACCTCACATTGTTCGATCAGGTCGAGAAGC 43309 || || |||||||||| || | |||||||| || | ||||||||||| ||| Sbjct 1085 AGCCCCCCGCCATCGACGCCGATATCAATCACCTCGCAGCGCTCGATCAGGTCCTCCAGC 1026 Query 43310 GTCACGC---GCTCCGGCAACCCTGCATTGATCCAGAAGTCTGCGCCGGCCCACCGGTCG 43366 || || |||| | | || | |||||| || ||||| ||||| || || Sbjct 1025 GTGTGGCACAGCTCGGAGGTCTGCGCCTC---CCAGAAATCCGCGCCTGCCCAGCGATCC 969 Query 43367 GACCGGAGGTTCATGCCGATCTCGACGTTGAGGTGCTTCGCGATGAA-CTGCTGGAACGA 43425 ||| | | || |||||||||||||||||||||||| || | || | || ||||||| Sbjct 968 GACAGTAACGCCAGGCCGATCTCGACGTTGAGGTGCTTGGCCAGAAAGCCGC-GGAACGA 910 Query 43426 TCCGTCA--GTCTTGGTGCGGATCTTGTTGAGCTGGTCCTCCAGCCA---TTCGGCACTG 43480 | ||| ||| | |||| || | | | ||| | | |||| || Sbjct 909 CTCTTCACCGTCCAGCTGCGC--CTGGGCGTACCCACGCTCGATGAAGGGTTCGTCA--- 855 Query 43481 ACCGACCGCCCGAGATTCGGATTCGTGATGTAGTAGTTGGCCGGATCGAGGTAGGCTTTC 43540 |||||| |||| | |||||| || |||||||| ||| | || ||| | | Sbjct 854 ACCGACAGCCCCAAATTCGGGTTGGTGATGTACGCGTTAGAGAAGTCCCGGTGTTCGC-C 796 Query 43541 GACTTC-ACCATCTCTTCCGGAAACTCGTACAGCAC--GCC-GAGCGACTTCCGGTCGAC 43596 | | || | |||| | | ||||| || |||||||| || || |||||| ||||| Sbjct 795 GGCGTCTAGCATCGCCTTGGGAAATTCATACAGCACCGGCAAGAACGACTTA---TCGAC 739 Query 43597 GATTTTGCCGTCACGCACGTCGCGGTAGTACTGCAACTTCTCTTTGAACACACCGGCCGG 43656 ||| | |||||| ||||| | |||| |||| || ||||| |||||| |||||||| Sbjct 738 GATCTCGCCGTCGCGCACCTTGCGGGCGTACATCAGCTTCTGCCGGAACACGCCGGCCGG 679 Query 43657 CGGCTCGTCGCTTTGCGTTGT---CAGGATGATGACCCACCCTTCATCCCGCGACACCTG 43713 |||| | ||| || || || | |||||||| | || || ||| || || | Sbjct 678 CGGCGCATCGGACTGGGTGGTGGCCCAGATGATGA---ATCCCTCTGGCCGAGAGGCCAG 622 Query 43714 GCCTCCGGTCGCCTCCATGAACATCGCTTCTGCGTTCGCCCTCTTGCCGAAGACCCAGTG 43773 ||| || || ||||| | ||| || || ||||| |||| ||||||||| ||||| | Sbjct 621 GCCACCAGTGGCCTCGCGCAGCATGGCCTCGGCGTTGGCCCGCTTGCCGAACACCCACAG 562 Query 43774 CTCGTCGATAAGAATCTTTCC--TGAC-TTCTTGCCCGATACCGTGTCAGTGTCGGCCGC 43830 |||||| || | | || || | ||||||||||| ||||| || |||| ||||| Sbjct 561 CTCGTC---AACGAACACGCCGATGGCTTTCTTGCCCGACACCGTCTCGCTGTCCGCCGC 505 Query 43831 AACCACCTTCA--ACGACGCTCGACTGACGCGGTGCGTTATCGTGCGGATGTGATCTTGG 43888 ||||||||| | | || | | |||| |||||||| | ||||| | |||||| || Sbjct 504 AACCACCTTGAGGGTGGCGTTAGTCTGA--CGGTGCGTCACGGTGCGCAGGTGATCCTGC 447 Query 43889 ACATGAAACAGCTCGGACAGCTCTGCATCGGCCCGGATCATCCCCGCCGCCGGTTTGAAG 43948 || | | || | |||||| | || || | | ||| || ||| | || Sbjct 446 ACCTTGAGCAAGGCCTTGAGCTCTTCGTCAGCACCCACCATGTCCCGGATCGGGAGGTAG 387 Query 43949 CTGTTGTCCGCGACCTCCTTCGTCGGGGCGAGAATCAGGTGCTCTTCTTCCTCGCGCCAA 44008 ||| ||||||| |||||| ||||| || | || | | ||| | | | ||||| Sbjct 386 GAGTTATCCGCGATCTCCTTGGTCGGCGCCAAGATGATGAACTCACCCGACGCCCGCCAG 327 Query 44009 CACAAAATGACCGCCGTCAGCATGATTCCGGCCGCGATCGTCGATTTCGTATTCTTCTTG 44068 | || | || || |||||||| ||||| ||||| || || || ||||||||| Sbjct 326 TTGAGGATCAGTGCGGTGAGCATGATGCCGGCGGCGATGGTTGACTTGCCGTTCTTCTTG 267 Query 44069 CTGATCAGCAGAAAGAACTCGCGGATCAGTTGCTTGCCGGTTTCGGCATCGTAGGCACCG 44128 ||||||||||| | |||||||| || ||| || ||| | || | |||||||| ||| Sbjct 266 CTGATCAGCAGCATGAACTCGCTGACCAGGCGCCGGCCCGAGTCTGGGTCGTAGGCGCCG 207 Query 44129 AAAATGGCCGCGACGAAATCGAAGACCCA 44157 || || || || || || | | |||||| Sbjct 206 AAGATCGCAGCCACAAACTGGCTGACCCA 178 Score = 84.2 bits (92), Expect = 6e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 42668 GGATTGAGCGCCATGAGCGAGACTGCGTTAAACAGCGCCATCAGCGGGTCGATCTTGGCG 42727 |||||||| ||||| |||| || ||||| || |||||||||||||||||||||||||| Sbjct 1628 GGATTGAGGGCCATCAGCGTCACAGCGTTGAATAGCGCCATCAGCGGGTCGATCTTGGCC 1569 Query 42728 GTCCCGCTCACCTGCTTGGTGATG 42751 | ||||| |||| || || ||| Sbjct 1568 GAGCCGCTGGCCTGTTTAGTAATG 1545 >seq3336 Length=1417 Score = 136 bits (150), Expect = 1e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 40974 GCGATGACCGAGGCTGCCGACGCCGCAAGCCCCATCACGTTCACCGTTACCTTGGCCTTG 41033 ||||||| ||| || ||||| || || || || | | | |||||| || ||| ||||| Sbjct 249 GCGATGAACGACGCGGCCGAGGCGGCGAGGCCGAGGATTTGCACCGTCACTTTGCCCTTG 308 Query 41034 TGCTCGCGCAGCAGGTTGTAGATCGCGACGCCTTCAAAGAAGTCGCCGCCGGGCGAATTG 41093 ||||||||||||||||||||||| || | |||||||| | ||||||||| || ||| Sbjct 309 TGCTCGCGCAGCAGGTTGTAGATGGCCAGCCCTTCAAACACGTCGCCGCCTGGGCTGTTG 368 Query 41094 ACGTTCACCGTGACTTCGCGCGCGCCGATGTTGCGAAGCGCCGCGCTGATCCGCTTCGCG 41153 | ||||| || || || | | ||||| |||||||| |||||||||||||| || Sbjct 369 ATCTTCACGGTCACATCACTGTCACCGATAGATCGAAGCGCAGCGCTGATCCGCTTTGCA 428 Query 41154 GTGACGCC 41161 || ||||| Sbjct 429 GTTACGCC 436 >seq14219 Length=2704 Score = 113 bits (124), Expect = 1e-20 Identities = 152/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 27635 AGTTGCAGGCGAATCGCGGCTCGACGCCGCCTTTTCCGTCCGACACCATCACATCGCAGT 27694 ||||||||| || || ||||| | ||| || |||||||||| ||||||| ||||||| Sbjct 1581 AGTTGCAGGTAAAGCGTGGCTCCATGCCCCCCTTTCCGTCCGGCACCATCTGGTCGCAGT 1640 Query 27695 AGCGCGCGATTTCGTACAGCCCCCACTTGTCGATCATCGATGCATCGA--CGGTCTTTCC 27752 | ||||||| || ||| ||| || | ||| | ||| |||| ||||| || Sbjct 1641 ACTGCGCGATCCGATAGAGCGACCAGCGATCAACCATTGTTGCGTCGATGCGGTCG--CC 1698 Query 27753 GAGCCCGTAGCGCTCGTTCAACAGCAGGTCGTAGAAGATCCACGCGGGATTGTTCGTCCA 27812 ||| |||||| || || || || ||||||||||||||| || || ||||| || | Sbjct 1699 GAGGCCGTAGTATGGGTGCAGCACCAAGTCGTAGAAGATCCAGGCCGGGTTGTTGGTATA 1758 Query 27813 TGCCGGTTTGAACGTGCCGTCCCACGTGCC 27842 ||| |||||| ||||| ||||| |||| Sbjct 1759 GGCCTCTTTGAATGTGCCATCCCAAATGCC 1788 >seq4948 Length=1101 Score = 113 bits (124), Expect = 1e-20 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 3558 CCCTTCACCTCGTGCGCCTCGAGCTGGCCGTTCGCGAGCATCACCGTGAAATCGGGCGTG 3617 ||||| ||||||||| ||| | ||||| |||||||| || | ||| ||||||||| Sbjct 421 CCCTTGACCTCGTGCAACTCCATGGCGCCGTCAGCGAGCATTACGGCGAAGTCGGGCGTG 362 Query 3618 TAGAACGTGTTGTCGGCGAGACGGAACTTGATGCCCTCGAA-TCGATACCAGACGATTTC 3676 |||||||||||||| ||||| || | |||||| || ||||| | || |||| |||| | Sbjct 361 TAGAACGTGTTGTCAGCGAGGCGCAGCTTGATCCCTTCGAACTTGA-ACCATGCGATGTG 303 Query 3677 GCCGGCCTGCTTCCGCGCCTCCAGATGGTCGGCGTAGCGCTGC-TCGGTCTTGTTCATCG 3735 || | || || | | ||| | || ||| ||| || ||||||||||||||| Sbjct 302 CCCAACGAACTGGCGGTCTTTCAGGTACTCCATGTA-CGCCGCTTCGGTCTTGTTCATCT 244 Query 3736 CGCCGGCCTTCAGTCGACCGAGCGCCTG 3763 |||||| || || || |||||||| || Sbjct 243 CGCCGGTTTTGAGCCGGCCGAGCGCTTG 216 >seq18521 Length=247 Score = 109 bits (120), Expect = 2e-19 Identities = 168/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 43466 AGCCATTCGGCACTGACCGACCGCCCGAGATTCGGATTCGTGATGTAGTAGTTGGCCGGA 43525 ||||| || ||||| || || ||||||| ||||| || ||||||||| |||| | ||| Sbjct 11 AGCCACTCCGCACTCACGGATCGCCCGATGTTCGGGTTGGTGATGTAGAAGTTTTCTGGA 70 Query 43526 TCGAGGTAG-GCTTTCGACTTCACCATCTCTTCCGGAAACTCGTACAGCACGCCGAGCGA 43584 | ||||| |||| | |||||| |||| |||||||| || || || |||| Sbjct 71 TTCAGGTATTGCTTGTTAGCG-ACCATCCGGACCGGGAACTCGTAAAGAACCCCCAGCGT 129 Query 43585 CTTCCGGTCGACGATTTTGCCGTCACGCACGTCGCGGTAGTACTGCAACTTCTCTTTGAA 43644 ||| | || || | || || ||||| || ||||| |||| || ||| ||||| Sbjct 130 CTTGCAATCCACCACCTTTCCATCACGAACATCGCGCCAGTAACTCAGGCGCTCCTTGAA 189 Query 43645 CACACCGGCCGGCGGCTCGTCGCTTTGCGTTGTCAGGATGATGACCCACCCTTCATC 43701 || || ||||||||||| || ||||| || || || ||||||||| || || || Sbjct 190 AACCCCTGCCGGCGGCTCATCACTTTGAGTGGTGAGATAGATGACCCATCCCTCTTC 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143365293181108