Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_007804.2
Length=39104
Score E
Sequences producing significant alignments: (Bits) Value
seq4948 188 2e-43
seq26395 123 6e-24
seq4096 87.8 4e-13
seq9311 84.2 5e-12
>seq4948
Length=1101
Score = 188 bits (208), Expect = 2e-43
Identities = 244/332 (73%), Gaps = 4/332 (1%)
Strand=Plus/Plus
Query 35165 CAGGCTCTTGGTCGACTCAAAACAGGCCAGATGAACAAAACAGAATCTGCGTATTGCCAG 35224
|| || || || || |||||||| ||| |||||||||| || ||| | ||||| ||
Sbjct 216 CAAGCGCTCGGCCGGCTCAAAACCGGCGAGATGAACAAGACCGAAGCGGCGTACATGGAG 275
Query 35225 CACCTTGAGCAGCGTAAACGTGCAGGGGAAGTCGCCTGGTATCGGTTCGAGGGTATCAAG 35284
|||| | | || | | ||| | |||| |||| |||||| || ||||||
Sbjct 276 TACCTGAAAGACCGCCAGTTCGTTGGGCACATCGCATGGTTCAAGTTCGAAGGGATCAAG 335
Query 35285 CTGCGGCTGGCTGACAACACGTTTTATACGCCCGATTTCGCTGTGATGCTCGCCACCGGA 35344
||||| || |||||||||||||| || |||||||| ||||| || |||||||| |||
Sbjct 336 CTGCGCCTCGCTGACAACACGTTCTACACGCCCGACTTCGCCGTAATGCTCGCTGACGGC 395
Query 35345 GAGATGGAACTGCACGAAGTGAAAGGTTTCTGGACCGACGACGCCAGGGTGAAAACCAAA 35404
| ||||| ||||||| || || || ||||||||||| |||||||||||||||||||||
Sbjct 396 GCCATGGAGTTGCACGAGGTCAAGGGCTTCTGGACCGATGACGCCAGGGTGAAAACCAAA 455
Query 35405 GTCGC-CGCAGATCAGTATCCGTTCCGAATCATCGGGGTAACGGTTAA-ACCAAAGAAAG 35462
| ||| | ||| | ||||||||||| ||| ||| || || | || |||||| ||
Sbjct 456 GCCGCGCCCAG-CCTGTATCCGTTCCAGATCGTCGCAGTCACTGCCAAGACCAAA-AAGT 513
Query 35463 CAGGTGGTGGCTGGAATATCGAAGAGTTCTGA 35494
| || || |||||| | ||| ||||||||
Sbjct 514 CTGGCGGCGGCTGGGCATTTGAAAAGTTCTGA 545
>seq26395
Length=417
Score = 123 bits (136), Expect = 6e-24
Identities = 91/106 (86%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 2349 GGGCAATCTTCCGACCAATTTCCGCATCAAAGTTTTCCGGGCTTGCACAGGCGCTCTCTC 2408
|||| ||||| |||||||| ||||| || ||||| || ||||| || || |||||||| |
Sbjct 1 GGGCGATCTTGCGACCAATCTCCGCGTCGAAGTTCTCAGGGCTGGCGCACGCGCTCTCAC 60
Query 2409 CGGTGACGGTGAAGCCGTTGCGCAGCACCAGAACGCAGAACGTCAG 2454
|||||||||||||||| ||||||||||| || |||||||| |||||
Sbjct 61 CGGTGACGGTGAAGCCATTGCGCAGCACTAGGACGCAGAAGGTCAG 106
>seq4096
Length=1707
Score = 87.8 bits (96), Expect = 4e-13
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 2865 CAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 2922
||||||||||||||| ||||| ||||||||||||||| |||||| |||||||||||||
Sbjct 1572 CAGGATTCGAACCTGTGACCATCCGCTTAGAAGGCGGATGCTCTATCCAACTGAGCTA 1515
>seq9311
Length=16340
Score = 84.2 bits (92), Expect = 5e-12
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 2864 GCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 2922
|||||| ||||||||||||||| ||||||||||||||| |||||| |||| ||||||||
Sbjct 3971 GCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTA 3913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 124965606305796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |