Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq4948 188 2e-43 seq26395 123 6e-24 seq4096 87.8 4e-13 seq9311 84.2 5e-12 >seq4948 Length=1101 Score = 188 bits (208), Expect = 2e-43 Identities = 244/332 (73%), Gaps = 4/332 (1%) Strand=Plus/Plus Query 35165 CAGGCTCTTGGTCGACTCAAAACAGGCCAGATGAACAAAACAGAATCTGCGTATTGCCAG 35224 || || || || || |||||||| ||| |||||||||| || ||| | ||||| || Sbjct 216 CAAGCGCTCGGCCGGCTCAAAACCGGCGAGATGAACAAGACCGAAGCGGCGTACATGGAG 275 Query 35225 CACCTTGAGCAGCGTAAACGTGCAGGGGAAGTCGCCTGGTATCGGTTCGAGGGTATCAAG 35284 |||| | | || | | ||| | |||| |||| |||||| || |||||| Sbjct 276 TACCTGAAAGACCGCCAGTTCGTTGGGCACATCGCATGGTTCAAGTTCGAAGGGATCAAG 335 Query 35285 CTGCGGCTGGCTGACAACACGTTTTATACGCCCGATTTCGCTGTGATGCTCGCCACCGGA 35344 ||||| || |||||||||||||| || |||||||| ||||| || |||||||| ||| Sbjct 336 CTGCGCCTCGCTGACAACACGTTCTACACGCCCGACTTCGCCGTAATGCTCGCTGACGGC 395 Query 35345 GAGATGGAACTGCACGAAGTGAAAGGTTTCTGGACCGACGACGCCAGGGTGAAAACCAAA 35404 | ||||| ||||||| || || || ||||||||||| ||||||||||||||||||||| Sbjct 396 GCCATGGAGTTGCACGAGGTCAAGGGCTTCTGGACCGATGACGCCAGGGTGAAAACCAAA 455 Query 35405 GTCGC-CGCAGATCAGTATCCGTTCCGAATCATCGGGGTAACGGTTAA-ACCAAAGAAAG 35462 | ||| | ||| | ||||||||||| ||| ||| || || | || |||||| || Sbjct 456 GCCGCGCCCAG-CCTGTATCCGTTCCAGATCGTCGCAGTCACTGCCAAGACCAAA-AAGT 513 Query 35463 CAGGTGGTGGCTGGAATATCGAAGAGTTCTGA 35494 | || || |||||| | ||| |||||||| Sbjct 514 CTGGCGGCGGCTGGGCATTTGAAAAGTTCTGA 545 >seq26395 Length=417 Score = 123 bits (136), Expect = 6e-24 Identities = 91/106 (86%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 2349 GGGCAATCTTCCGACCAATTTCCGCATCAAAGTTTTCCGGGCTTGCACAGGCGCTCTCTC 2408 |||| ||||| |||||||| ||||| || ||||| || ||||| || || |||||||| | Sbjct 1 GGGCGATCTTGCGACCAATCTCCGCGTCGAAGTTCTCAGGGCTGGCGCACGCGCTCTCAC 60 Query 2409 CGGTGACGGTGAAGCCGTTGCGCAGCACCAGAACGCAGAACGTCAG 2454 |||||||||||||||| ||||||||||| || |||||||| ||||| Sbjct 61 CGGTGACGGTGAAGCCATTGCGCAGCACTAGGACGCAGAAGGTCAG 106 >seq4096 Length=1707 Score = 87.8 bits (96), Expect = 4e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2865 CAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 2922 ||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||| Sbjct 1572 CAGGATTCGAACCTGTGACCATCCGCTTAGAAGGCGGATGCTCTATCCAACTGAGCTA 1515 >seq9311 Length=16340 Score = 84.2 bits (92), Expect = 5e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2864 GCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 2922 |||||| ||||||||||||||| ||||||||||||||| |||||| |||| |||||||| Sbjct 3971 GCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTA 3913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124965606305796