Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_007805.1 Length=39199 Score E Sequences producing significant alignments: (Bits) Value seq18817 205 2e-48 seq30539 96.9 9e-16 seq2604 95.1 3e-15 seq6698 87.8 4e-13 seq3004 86.0 2e-12 >seq18817 Length=1047 Score = 205 bits (226), Expect = 2e-48 Identities = 250/341 (73%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 26606 CCTGGGTGAGTTTGGCGTGCTTGCGCGCGGCCTTGATGCTGTCTTTGAGTTCCATCCGAA 26665 |||| |||| ||||||||| |||||| ||||| | | ||||||| |||||||| Sbjct 826 CCTGATTGAGCTTGGCGTGCCGGCGCGCTGCCTTTAAACGATCTTTGAATTCCATCCAGC 767 Query 26666 AAGTATCAGGGGCGTTCCCATATCCTTGCAAATGAGTTTTCCCCTGAGCTATCTTATGAG 26725 ||||| | ||| | |||||||||||||||||| || ||||| | | ||| |||| | Sbjct 766 GAGTATTACGGGTGCTCCCATATCCTTGCAAATCGGTATTCCCATAACCTACTATATGGG 707 Query 26726 TATTCCCATAAGGAGGGGTGCTATGACCACCATCTACAAAGAGCTCGTCGCCCACTTTGG 26785 ||||||| || ||||||| |||| ||| || || || || ||||| ||| ||| || Sbjct 706 TATTCCCGTATGGAGGGGCAGCATGAACACTATTTATAAGGACCTCGTTGCCTTCTTCGG 647 Query 26786 GACTCAAGACGAGACCGCCGCGAAGCTCGGCGTTGACCAAAGCACCGTGTCTGGATGGGT 26845 ||||| || | ||||| | |||||| || || ||||||||||| || || ||||| Sbjct 646 CACTCAGGAGGTCACCGCTGAAAAGCTCAAAGTCGATCAAAGCACCGTTTCCGGGTGGGT 587 Query 26846 CCGGGGAAAGCACGGGATGTCTCCTCTTGTCGCGAAGCGGGCTCAGGTTCTGACCGACGG 26905 |||| ||||||||| |||||||| | || || ||||| || ||| |||||| || Sbjct 586 TCGGGAAAAGCACGGAATGTCTCCAGTGGTTGCCAAGCGAGCGGAGGCGTTGACCGGAGG 527 Query 26906 AAAATTCAAGAAAGAGGACCTGTGTCCGGCTTTCCCGTGGG 26946 ||||| ||||| ||| |||||| | || || |||| Sbjct 526 CGCTTTCAAAAAAGAATCCCTTTGTCCGTCGTTTCCCTGGG 486 >seq30539 Length=7398 Score = 96.9 bits (106), Expect = 9e-16 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 30118 GAGAATCAGCACCAGGCCGAGACCATCTCCAGCCTTGAATCGCTGTTCATGGCAGGCGAG 30177 || ||||| || || ||||||| ||| ||||||||||||| | ||| || ||| | Sbjct 5857 GAAAATCACCAGCAAGCCGAGAAGATCGCCAGCCTTGAATCCATCTTCCAGGTGGGCATG 5798 Query 30178 ACGCCTACTCAGTTCTGCAAGCGCCTGAACGGGGTGAACTGCGCCAAGGTAAACAGCACC 30237 || ||||| |||||||||||||||||||| || ||||||||| |||| |||| | | Sbjct 5797 ACCCCTACGCAGTTCTGCAAGCGCCTGAATGGTGTGAACTGCCAGCAGGTCAACAACGCG 5738 Query 30238 CT-GTGCCAACTCGGCTGGCTCTTCAATGAGCAGCGCGAAGAGGAGGGCGCACCGCGGTA 30296 || || | | | ||| | ||||| | |||| || ||| || || | || Sbjct 5737 CTACTGGC-CCGCAAGTGGATATTCAACTCGGAGCGAGACGAGAAGCGCTCGGTCAAGTT 5679 Query 30297 TCGCGTCGCCAGCCGTGTCCGCGACAAGTACCTCACCGAG 30336 || |||| | | |||||||||||||||||||||| Sbjct 5678 CCGGGTCGGCTCAATCGCCCGCGACAAGTACCTCACCGAG 5639 >seq2604 Length=2045 Score = 95.1 bits (104), Expect = 3e-15 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 30561 CCGGTGATCGCCGGGCCATGGCCGTCCTACCGTCAATTCCGCGACCTGCCCGAGCGTAAG 30620 ||||| |||| |||||| ||||| ||||| || ||| || ||||||||||| | Sbjct 1121 CCGGTAATCGTCGGGCCCTGGCCAACCTACGCCCACTTCAAGGATCTGCCCGAGCGCGAA 1062 Query 30621 CGCTGGGTGCTCTACGGCCACGCCAAGGCATGCCGCGGTGCGCTTGAAGATCAAGGGTTC 30680 ||||||||||| |||||| || ||||| | |||| || || ||| | || |||||| Sbjct 1061 CGCTGGGTGCTGTACGGCTCGGCAAAGGCCTATCGCGAAGCTCTGGAAAACCAGGGGTTC 1002 Query 30681 CTCATGGCCGAGGGATACCACGACTTC 30707 ||||||| ||| || | ||||||| Sbjct 1001 GTCATGGCTGAGTCTTATCGCGACTTC 975 >seq6698 Length=673 Score = 87.8 bits (96), Expect = 4e-13 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24024 GGTCAGAGCATCGAGGAGCGCTTGCTTCCGGCGCTGACCGTGCAGGTACTCGCGCAGGGC 24083 || ||| || ||||| || |||| ||| ||| || | |||||||| ||||| ||| Sbjct 361 GGCCAGCGCGTCGAGCAGGATCTGCTGGCGGTTCTGCCCATCCAGGTACTGGCGCACGGC 420 Query 24084 GATGATGACCACGCTGTTCATGCTGCGTTCATCGCGCCTGGCCTCGGCTTCCACCTCGGC 24143 ||||| ||||||||||||||||| || || | || | ||||| | ||||| Sbjct 421 CTGGATGAAAACGCTGTTCATGCTGCGGTCGCCGGTATTCGCTGCAGCTTCAATATCGGC 480 Query 24144 CCTCAGGCCGTCCGGCAGTCGGACAACGAACTTGTC 24179 | ||||||||| ||||| || || || |||||||| Sbjct 481 GCGCAGGCCGTCGGGCAGGCGCACCACAAACTTGTC 516 >seq3004 Length=1935 Score = 86.0 bits (94), Expect = 2e-12 Identities = 211/313 (67%), Gaps = 13/313 (4%) Strand=Plus/Plus Query 33671 GCCAAGGAACTCGGCGTACCTGTGGTGGTGCTGGCGCAGCTCAACCGTGGGCCGA--AGG 33728 ||||||||||| | ||||| ||| | ||||||| || |||||||||| ||| | | Sbjct 1280 GCCAAGGAACTGGATGTACCGGTGATCCTGCTGGCCCAACTCAACCGTGATTCGACCAAG 1339 Query 33729 CG-CGGGGCAACAAGCGTCCGACCAAGAGCGACCTGCGTGACTCCGGGCAGATCGAGGCC 33787 || | |||||| ||| |||| | ||| |||| ||||| || || ||||||||| Sbjct 1340 CGCCCGGGCAAGAAG---CCGATCGCCTCGGACTTGCGCGACTCAGGCCAAATCGAGGCC 1396 Query 33788 GATGCGGACGTGGTGGTGCTGGTCCACAGGGACCAGGAAAGCGACGCCGGCAAGGCTGGC 33847 ||||| || | | || |||||| | ||| ||| ||||| | ||| || || Sbjct 1397 GATGCCCACTGCATCATCCTTGTCCACCGCGACATGGACAGCGAGGAGGGCCAGAACGGA 1456 Query 33848 ATTACCGAACTGATCGTCGACAAGAACCGGCACGGGCAGGTGGGTGTGGCGCA-CGTTCA 33906 || || ||| | | |||| | |||||| | |||||| | ||| |||||| Sbjct 1457 GCGACAGAGCTGCTTATGCCCAAGTGCAGGCACGCACCGGTGGG-CTCATGCATCGTTCA 1515 Query 33907 GCACCAGGGCCAGTACCACCGTTTCGTGGAGATC-ATCGGCGGCTATCAGCCCAGCGAGG 33965 ||| |||||| ||| | | | |||||| | || | ||||| |||||| | ||| Sbjct 1516 GCAGCAGGGCAAGTTCGCCAGGTTCGTGAACTTCGCTGGGCGG----GAGCCCACCCAGG 1571 Query 33966 AAGAAGTCGAAAT 33978 |||| || || || Sbjct 1572 AAGAGGTGGAGAT 1584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125269495431866