Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4839 104 2e-17 seq20241 98.7 9e-16 seq24420 87.8 2e-12 seq451 87.8 2e-12 seq11056 82.4 7e-11 seq2328 82.4 7e-11 >seq4839 Length=4080137 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | || | ||||||||| || || ||||||||||| Sbjct 529188 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 529129 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||| ||||| || |||| || | ||||||||| || ||| Sbjct 529128 AGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCAGGGGGG 529069 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 529068 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 529009 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| |||||||| || || || ||||| |||||||| Sbjct 529008 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 528962 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | || | ||||||||| || || ||||||||||| Sbjct 529644 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 529585 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||| ||||| || |||| || | ||||||||| || ||| Sbjct 529584 AGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCAGGGGGG 529525 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 529524 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 529465 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| |||||||| || || || ||||| |||||||| Sbjct 529464 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 529418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | || | ||||||||| || || ||||||||||| Sbjct 529416 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 529357 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||| || || || |||| | | ||||||||| || ||| Sbjct 529356 AGAGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 529297 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 529296 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 529237 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| |||||||| || || || ||||| |||||||| Sbjct 529236 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 529190 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | || | ||||||||| || || ||||||||||| Sbjct 528960 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 528901 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||| || || || | || | | ||||||||| || ||| Sbjct 528900 AGAGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAAATCAGCCTCTGCTGGTCAGGGGGG 528841 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 528840 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 528781 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| |||||||| || || || ||||| |||||||| Sbjct 528780 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 528734 >seq20241 Length=2711202 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||| || | || ||| || || | || | ||||||||| || || ||||||||||| Sbjct 1753126 AGCCTCCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 1753185 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || ||||| |||||||| |||| | | ||||||||| || | Sbjct 1753186 AGAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 1753245 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| ||||| || || ||| || ||| | | ||| | || || ||| ||| | Sbjct 1753246 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 1753305 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 1753306 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1753354 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||||||||| || || ||||||||||| | ||||| || || ||||| ||||| Sbjct 1753385 GGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCC 1753444 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | | ||||||||| || ||||| ||||| || || ||| || ||| Sbjct 1753445 TGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTT 1753504 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | ||| | || || ||| ||| | || | ||| | ||| || ||||| || || Sbjct 1753505 CACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 1753564 Query 131217 TTTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 1753565 CTTCACGAAGATCTGCAT 1753582 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||||||||| || || ||||||||||| | ||||| || || ||||| ||||| Sbjct 1753613 GGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCC 1753672 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | | ||||||||| || ||||| ||||| || || ||| || ||| Sbjct 1753673 TGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTT 1753732 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | ||| | || || ||| ||| | || | ||| | ||| || ||||| || || Sbjct 1753733 CACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 1753792 Query 131217 TTTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 1753793 CTTCACGAAGATCTGCAT 1753810 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||||||||| || || ||||||||||| | ||||| || || ||||| ||||| Sbjct 1753841 GGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCC 1753900 Query 131097 TGCGTAGATTAAACGCTGCTGGTC--CGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC 131154 ||| |||| | | ||||||||| || ||||| ||||| | || ||| || | Sbjct 1753901 TGCAAAGATGAGCCTCTGCTGGTCAGGGGGGGGATGCCTTC--TATCCTGGATCTTGGCC 1753958 Query 131155 TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGA 131214 || | | ||| | || || ||| ||| | || | ||| | ||| |||||||| || Sbjct 1753959 TTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGG 1754018 Query 131215 GTTTTTACGAAAATCTGCAT 131234 || || |||||||||||||| Sbjct 1754019 GTCTTCACGAAAATCTGCAT 1754038 >seq24420 Length=3268280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || || || || | |||| ||||||||| || || ||||||||||| Sbjct 2497444 AGCCACCCCTCAGACAGAGGACCAGGTGTAGGGTCGACTCTTTCTGGATGTTGTAATCAG 2497503 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || | ||| |||||||| ||| | | |||||||| ||| | Sbjct 2497504 AAAGAGTGCGGCCATCTTCCATCTGTTTGCCTGCAAAGAGGAGCCTCTGCTGGT-CGGGG 2497562 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| |||||||| || ||| || ||| | | || |||| || ||| ||| | Sbjct 2497563 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCT---CAGTGTCACTGGGCTCTA 2497619 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || | ||| || || || ||||| |||||||| Sbjct 2497620 CCTCCAGGGTGATGGTCTTGCAGGTCAGGGTCTTCACGAAGATCTGCAT 2497668 >seq451 Length=5792110 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | | || ||| | ||| | ||| |||||||||||| |||||| || Sbjct 1082994 GCCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAGTGTTGTGGTCAGA 1082935 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || | |||||||| || |||| | |||||||| ||||| Sbjct 1082934 CAGAGTACGTCCATCTTCCCGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGGTCAGGAGG 1082875 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| ||| || ||| | | || | |||| | || |||| Sbjct 1082874 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATCATATCCGAGGGTTCGAC 1082815 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || ||||| || || || || || || |||||||||||||| Sbjct 1082814 CTCGAGAGTGACGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 1082767 >seq11056 Length=1110308 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | | || ||| ||| | || |||||||||||||||||||| || Sbjct 356877 GCCACCACGAAGTCTCAACACAGGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 356818 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || | |||||||| || |||| | | |||||||| ||||| Sbjct 356817 CAGAGTACGTCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 356758 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| ||| || | | | | || | ||||| | || | || Sbjct 356757 AATTCCTTCCTTGTCCTGGATCTTGGCCATTACATTTTCTATTGTATCCGAGGGTTTGAC 356698 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || |||||||||||||| Sbjct 356697 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 356650 >seq2328 Length=1860655 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | || ||| | ||| | || |||||||||||| ||||||| || | Sbjct 1240010 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGAC 1240069 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || |||||||| || |||| | | |||||||| ||||| Sbjct 1240070 AAAGTACGTCCATCTTCCAGGTGCTTGCCAGCAAAGATCAGTC-TTGCTGGTCAGGAGGA 1240128 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||| |||| ||||| ||| || ||| | | || ||||| | || |||| Sbjct 1240129 ATTACTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTGTTGTATCTGAGGGTTCGACC 1240188 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || |||||||||||||| Sbjct 1240189 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 1240235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471831588385920