Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq4839 104 2e-17
seq20241 93.3 3e-14
>seq4839
Length=4080137
Score = 104 bits (114), Expect = 2e-17
Identities = 153/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| ||||| || || || ||||||||||| | || ||| | ||
Sbjct 529858 CAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 529799
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| ||||| || ||| | || |||| ||| ||||| || | |||||| |||||
Sbjct 529798 TTCCAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 529739
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || |||||| | | | ||||| | ||||||| |||| |||||||
Sbjct 529738 CTGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 529681
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || |||||||| || || || || ||||||||
Sbjct 529680 GTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 529646
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| || ||||| || || |||||||| || | | || | | ||
Sbjct 529173 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 529114
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| |||||||||||| | || | || ||| ||||| || | |||||| |||||
Sbjct 529113 TCCAGCTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 529054
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || |||||| | | | ||||| | ||||||| |||| ||||||||
Sbjct 529053 TGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 528996
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || |||||||| || || || || ||||||||
Sbjct 528995 TCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 528962
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| || ||||| || || |||||||| || | | || | | ||
Sbjct 529629 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 529570
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| |||||||||||| | || | || ||| ||||| || | |||||| |||||
Sbjct 529569 TCCAGCTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 529510
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || |||||| | | | ||||| | ||||||| |||| ||||||||
Sbjct 529509 TGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 529452
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || |||||||| || || || || ||||||||
Sbjct 529451 TCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 529418
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| || ||||| || || ||||||||||| | || ||| | ||
Sbjct 528717 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 528658
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|||| ||||| || ||| | || |||| ||| ||||| || | ||||||||| ||
Sbjct 528657 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCC 528598
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
|| | | ||| || | | | ||||| | ||||||| |||| ||||||||
Sbjct 528597 TGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 528538
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| || |||| || || || || |||||||||
Sbjct 528537 TTACCAGTCAAGGTCTTCACGAAGATCTGCATT 528505
>seq20241
Length=2711202
Score = 93.3 bits (102), Expect = 3e-14
Identities = 162/234 (69%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| |||| || | || |||| ||||| || ||||| || || |||||||| || |
Sbjct 1753811 CCCACCTCTGAGGCGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 1753870
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
| || | | || |||| |||||||| ||| | || |||| ||| ||||| ||
Sbjct 1753871 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 1753930
Query 16828 C--ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| ||| ||| | || || || |||||| | | | ||||| | |||||||
Sbjct 1753931 GGGATGCCTTCTATCCTGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCC 1753988
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|||| ||||||||| || |||||||| || || || |||||||||||||||
Sbjct 1753989 ACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAAATCTGCATTTTG 1754042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404936369611870
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |