Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq15337 127 1e-24
seq2150 102 5e-17
seq11056 93.3 3e-14
seq4839 89.7 3e-13
seq29157 86.0 4e-12
seq11297 82.4 5e-11
>seq15337
Length=5198
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 1030 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 1089
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 1090 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1124
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 4261 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 4320
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 4321 GCCGGTATTTAGCCTTA 4337
>seq2150
Length=2606213
Score = 102 bits (112), Expect = 5e-17
Identities = 202/296 (68%), Gaps = 5/296 (2%)
Strand=Plus/Minus
Query 6189 GTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC--GCCAAGGTCGAGGGTA 6246
||| | ||| |||||| | |||||| ||||| || |||| |||||||| ||||| |
Sbjct 238727 GTGTCAGACCAGTTCTATCACTACAAGATGCCTCG--TCTGATTGCCAAGGTTGAGGGCA 238670
Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306
| ||||| || || || || || || ||||||||| ||| | || || ||||| |
Sbjct 238669 AAGGAAATGGAATCAAGACAGTTATAGTCAACATGGTTGACATAGCCAAAGCGCTTAATC 238610
Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366
| | | || || || || ||||||||||| || ||||| || || ||| | |||||||
Sbjct 238609 AGCGTCCAACGTATCCCACCAAATATTTCGGTTGTGAACTGGGAGCACAGGCCCAGTTTG 238550
Query 6367 ATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACT 6426
|| || || || || | ||| | | ||||| ||| | | |||||||| | |
Sbjct 238549 ATGTTAAGAATGACCGTTACATTGCCAGTGGATCTCATGAGGCGAATAAGCTGCAAGGCA 238490
Query 6427 TACTTGACGGCTTTATT-CGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGA 6481
| | || || || ||| || ||||| || |||| || || || || || ||
Sbjct 238489 TGTTGGATGGATTCATTAAAAAAATTTGTTCTCTGTCCTGAGTGTGAGAATCCCGA 238434
>seq11056
Length=1110308
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| |||||||||| |||||||||||| ||||| ||||||| | |||| | ||
Sbjct 356862 CAACACAGGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATC 356803
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| ||| || || ||||| || || | ||| || || | || | ||||| |||||
Sbjct 356802 TTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 356743
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || | | ||||| | | ||||| || || || | || || ||
Sbjct 356742 CTGGATCTTGGCCATTACATTTTCTATTGTATCCGAGGGTTTGACCTCGAGAGTGATGGT 356683
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| ||||||| ||| |||||||| |||||||| ||
Sbjct 356682 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 356647
>seq4839
Length=4080137
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| |||| ||| | |||| || || || ||| || || || |||||||||||
Sbjct 528960 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 528901
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || | || || | ||||| |||||||| || || | || || || | ||||
Sbjct 528900 AGAGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAAATCAGCCTCTGCTGGTCAGGGGGG 528841
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || |||||| || || |||||| |||| || || || | || ||
Sbjct 528840 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 528781
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || ||||| |||| ||| |||||||| ||||||||
Sbjct 528780 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 528734
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| |||| ||| | |||| || || || ||| || || || |||||||||||
Sbjct 529416 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 529357
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || | || || | ||||| |||||||| || || | || || || | ||||
Sbjct 529356 AGAGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 529297
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || |||||| || || |||||| |||| || || || | || ||
Sbjct 529296 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 529237
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || ||||| |||| ||| |||||||| ||||||||
Sbjct 529236 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 529190
>seq29157
Length=6873498
Score = 86.0 bits (94), Expect = 4e-12
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185
|||||||||||| ||||| ||||||||| | | | || || | ||| || || |||||
Sbjct 2566413 CTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAA 2566472
Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245
|| || | ||| || || | |||| |||||||| || || || ||| |||||
Sbjct 2566473 GATCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTTTACATT 2566532
Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305
| | |||||| | |||||| | | || || || || || |||| ||| ||||
Sbjct 2566533 TTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCAT 2566592
Query 38306 GAATATCTGCATGTT 38320
||| |||||||| ||
Sbjct 2566593 GAAAATCTGCATCTT 2566607
>seq11297
Length=1864957
Score = 82.4 bits (90), Expect = 5e-11
Identities = 146/212 (69%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||| ||| |||||||||||| | ||| ||| ||||| |||| | ||
Sbjct 1109645 CAACACGATATGAAGGGTGGACTCCTTTTGAATGTGGTAGTCAAACAAAGTACGTCCATC 1109704
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || | ||| || || | || | ||||| |||||
Sbjct 1109705 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTTCCTTGTC 1109764
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | | ||||| ||| || || | || || ||
Sbjct 1109765 CTGGATCTTAGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCGAGAGTGATGGT 1109824
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCA 38316
|| || |||| ||| |||| ||| ||| |||
Sbjct 1109825 CTT-CCTGTCAGGGTCTTCATGAAAATCCGCA 1109855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334821824343503
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |