Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq15337 127 1e-24 seq2150 102 5e-17 seq11056 93.3 3e-14 seq4839 89.7 3e-13 seq29157 86.0 4e-12 seq11297 82.4 5e-11 >seq15337 Length=5198 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 1030 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 1089 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1090 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1124 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 4261 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 4320 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 4321 GCCGGTATTTAGCCTTA 4337 >seq2150 Length=2606213 Score = 102 bits (112), Expect = 5e-17 Identities = 202/296 (68%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 6189 GTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC--GCCAAGGTCGAGGGTA 6246 ||| | ||| |||||| | |||||| ||||| || |||| |||||||| ||||| | Sbjct 238727 GTGTCAGACCAGTTCTATCACTACAAGATGCCTCG--TCTGATTGCCAAGGTTGAGGGCA 238670 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 | ||||| || || || || || || ||||||||| ||| | || || ||||| | Sbjct 238669 AAGGAAATGGAATCAAGACAGTTATAGTCAACATGGTTGACATAGCCAAAGCGCTTAATC 238610 Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366 | | | || || || || ||||||||||| || ||||| || || ||| | ||||||| Sbjct 238609 AGCGTCCAACGTATCCCACCAAATATTTCGGTTGTGAACTGGGAGCACAGGCCCAGTTTG 238550 Query 6367 ATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACT 6426 || || || || || | ||| | | ||||| ||| | | |||||||| | | Sbjct 238549 ATGTTAAGAATGACCGTTACATTGCCAGTGGATCTCATGAGGCGAATAAGCTGCAAGGCA 238490 Query 6427 TACTTGACGGCTTTATT-CGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGA 6481 | | || || || ||| || ||||| || |||| || || || || || || Sbjct 238489 TGTTGGATGGATTCATTAAAAAAATTTGTTCTCTGTCCTGAGTGTGAGAATCCCGA 238434 >seq11056 Length=1110308 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| |||||||||| |||||||||||| ||||| ||||||| | |||| | || Sbjct 356862 CAACACAGGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATC 356803 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || ||| || || ||||| || || | ||| || || | || | ||||| ||||| Sbjct 356802 TTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 356743 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || | | ||||| | | ||||| || || || | || || || Sbjct 356742 CTGGATCTTGGCCATTACATTTTCTATTGTATCCGAGGGTTTGACCTCGAGAGTGATGGT 356683 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| ||| |||||||| |||||||| || Sbjct 356682 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 356647 >seq4839 Length=4080137 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | |||| || || || ||| || || || ||||||||||| Sbjct 528960 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 528901 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | ||||| |||||||| || || | || || || | |||| Sbjct 528900 AGAGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAAATCAGCCTCTGCTGGTCAGGGGGG 528841 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || |||||| |||| || || || | || || Sbjct 528840 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 528781 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || ||||| |||| ||| |||||||| |||||||| Sbjct 528780 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 528734 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | |||| || || || ||| || || || ||||||||||| Sbjct 529416 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 529357 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | ||||| |||||||| || || | || || || | |||| Sbjct 529356 AGAGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 529297 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || |||||| |||| || || || | || || Sbjct 529296 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 529237 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || ||||| |||| ||| |||||||| |||||||| Sbjct 529236 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 529190 >seq29157 Length=6873498 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||||||||| ||||| ||||||||| | | | || || | ||| || || ||||| Sbjct 2566413 CTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAA 2566472 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || | ||| || || | |||| |||||||| || || || ||| ||||| Sbjct 2566473 GATCAGTCTTTGCTGGTCAGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTTTACATT 2566532 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | | |||||| | |||||| | | || || || || || |||| ||| |||| Sbjct 2566533 TTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCAT 2566592 Query 38306 GAATATCTGCATGTT 38320 ||| |||||||| || Sbjct 2566593 GAAAATCTGCATCTT 2566607 >seq11297 Length=1864957 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| ||| |||||||||||| | ||| ||| ||||| |||| | || Sbjct 1109645 CAACACGATATGAAGGGTGGACTCCTTTTGAATGTGGTAGTCAAACAAAGTACGTCCATC 1109704 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || || | || | ||||| ||||| Sbjct 1109705 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTTCCTTGTC 1109764 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| ||| || || | || || || Sbjct 1109765 CTGGATCTTAGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCGAGAGTGATGGT 1109824 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCA 38316 || || |||| ||| |||| ||| ||| ||| Sbjct 1109825 CTT-CCTGTCAGGGTCTTCATGAAAATCCGCA 1109855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334821824343503