Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq23530 187 3e-42
seq20687 140 4e-28
seq15277 132 6e-26
seq20974 102 1e-16
seq12120 96.9 4e-15
>seq23530
Length=2024980
Score = 187 bits (206), Expect = 3e-42
Identities = 278/393 (71%), Gaps = 1/393 (0%)
Strand=Plus/Plus
Query 32850 GCCCAATCGGCCTT-CTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 32908
|||||||| ||||| ||| |||||||||||| ||||||| | || || ||||| | |
Sbjct 954646 GCCCAATCTGCCTTTCTTCTTTACACAAGGCGTTGTCTCAACGGCGTTGAAGAGGAATTC 954705
Query 32909 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 32968
|||| || |||||||| || || ||| | | ||||| |||||||| ||||| ||
Sbjct 954706 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAGTGAGGAGACTGTACATTTCAGAATGTAT 954765
Query 32969 GTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGT 33028
|||||| ||||| ||||| || || |||||| | | || || |||||||| ||||||
Sbjct 954766 GTTTTCCATGGCAATTTGGAAGCCATAGAAGTAACGGGCTTCCGTAATCTGAACTTCTTG 954825
Query 33029 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33088
| || || || | || |||||||| ||||| || ||||| |||||| | || ||||
Sbjct 954826 GCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAGCCAG 954885
Query 33089 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 33148
||| || | |||||| | || || || | || | ||| | | || || ||
Sbjct 954886 AACACGTGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 954945
Query 33149 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 33208
|| | ||||| || || ||||||| || || ||||| || || |||||| | |||
Sbjct 954946 GGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCCTATACACCTGCCA 955005
Query 33209 GATGTCATGATATTGAATTGGAAAAATAACAAA 33241
| ||| | |||| || ||||| || |||||
Sbjct 955006 AACATCACGGTATTCCATAGGAAAGATGACAAA 955038
>seq20687
Length=1308170
Score = 140 bits (154), Expect = 4e-28
Identities = 113/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 999338 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 999279
Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 999278 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 999219
Query 62312 CTATTTCTAAGACCGTA 62328
|| ||||| | ||| ||
Sbjct 999218 CTGTTTCTTACACCATA 999202
Score = 102 bits (112), Expect = 1e-16
Identities = 122/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
|||| |||| ||| |||||||||||||| | || || ||||| || || || || || |
Sbjct 976518 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 976459
Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929
||||||| || || || | ||||| | || || ||| |||| || |||| ||| || |
Sbjct 976458 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 976399
Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975
||| || || || || ||| | |||| || ||||| || |||||
Sbjct 976398 GTTCCACAGTAGTGACCCCACTGTATAAGCCCTGGATTACTTTCAT 976353
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126
|| |||||||||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 989763 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGGTCCCTGGCACG 989704
Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186
|| || || |||||||| ||||| || | ||| |||||| | | || || |||||||
Sbjct 989703 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 989644
Query 63187 CGGTTCCAAGTATATGGC 63204
|| |||| ||| |||||
Sbjct 989643 AGGCTCCAGGTAAATGGC 989626
Score = 96.9 bits (106), Expect = 4e-15
Identities = 128/178 (72%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489
|||| || || ||||| || | || || || | |||||| || || || || || || |
Sbjct 994459 CATAGGTTTCATATGGGCCATACTCCTTGGCCAATTCACAGCTGGCTTCCAAGGCTCCAT 994400
Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549
||||||||||||| ||||||| |||||| | || || ||| | || ||||| || |
Sbjct 994399 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 994340
Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62607
| | | |||||||| || ||||| | ||||| || ||||| || || || | |||
Sbjct 994339 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 994282
>seq15277
Length=4737824
Score = 132 bits (146), Expect = 6e-26
Identities = 102/121 (84%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||||||||| ||||| | ||| |||||||| ||||| |||||||| || || || ||||
Sbjct 3367420 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 3367479
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| |||||||
Sbjct 3367480 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3367539
Query 32803 C 32803
|
Sbjct 3367540 C 3367540
Score = 93.3 bits (102), Expect = 5e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980
|||||||| || || ||||| | |||||||||||||| ||||| ||||| || |||||
Sbjct 3369376 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTCTCCATGGC 3369435
Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026
||||| || || ||||| || | || || |||||||| ||||||
Sbjct 3369436 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 3369481
>seq20974
Length=1049469
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744
|| ||||| || || | ||| |||||||| || ||||| ||||| || || | || ||
Sbjct 250905 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 250964
Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803
||||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||||
Sbjct 250965 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 251023
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104
|||||||||||||| ||||| ||||||||||||||||| || || | || ||||||
Sbjct 255297 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 255356
Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 33160
|| || || |||| | | || || ||||| | | || |||||| |||| ||| ||
Sbjct 255357 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCTTTTGATAAATCAAC 255412
>seq12120
Length=1614126
Score = 96.9 bits (106), Expect = 4e-15
Identities = 177/257 (69%), Gaps = 7/257 (3%)
Strand=Plus/Minus
Query 30404 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGATATTGTACTTCT 30461
||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| |||||
Sbjct 1445337 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 1445280
Query 30462 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 30521
| | |||||| ||| |||| |||| | | || ||||| || ||| ||| ||| | ||
Sbjct 1445279 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAGTTCGATCACCCTTTTTG 1445220
Query 30522 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 30581
|| | || | ||| ||| ||||| || | || || | |||||| |||||||||
Sbjct 1445219 ACTTCGAGCTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 1445160
Query 30582 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 30638
|| ||||| ||||| |||||| ||| || | |||| | || ||||| | |||
Sbjct 1445159 TCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 1445100
Query 30639 GCTATTCTACCATAGCA 30655
|||| ||| ||||||||
Sbjct 1445099 GCTACTCTCCCATAGCA 1445083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633388740754800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |