Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4839 118 9e-22 seq5365 87.8 2e-12 >seq4839 Length=4080137 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||||| ||||||| | || |||||| | | Sbjct 528734 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 528793 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||| || || || || |||||||| Sbjct 528794 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 528853 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | ||||||||||| ||||| | ||||||| |||||| | |||||||| Sbjct 528854 CAGAGGCTGATTTTTGCCGGGAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 528913 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 528914 ATCCAGAAAGAGTCGACCCTGCA 528936 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||||| ||||||| | || |||||| | | Sbjct 529646 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 529705 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||| || || || || |||||||| Sbjct 529706 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 529765 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| ||||| | ||||||| ||||| || || ||||| Sbjct 529766 CAGAGGCTCATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 529825 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||||||||| || || Sbjct 529826 ATCCAGAAAGAATCCACTCTGCA 529848 >seq5365 Length=1496801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || | ||| | | Sbjct 702032 ATGCAGATCTTTGTGAAGACCTTGATGGGCAAGACCATCACTCTAGAGATCGAGCCCAGT 701973 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| | ||| | || |||| |||| || ||||| || || | |||||||||| Sbjct 701972 GACACCACTGAG--AATGTCAAAGCTAAAATCCAA-GACAAGGAGGGCAGTCCACCTGAC 701916 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| | |||||||| | | |||| |||||| || || || Sbjct 701915 CAGCAGCGTCTGATTTTCACGGGCAAACAGCTGAAGGATGGCCGCACTCTGTCAGACTAT 701856 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || |||| ||||| || || || ||||| Sbjct 701855 AATATCCAGGAAGAGTCCACTCTGCACTTGGTGCT 701821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433165798965095