Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq23530 149 7e-31 seq15277 100 3e-16 >seq23530 Length=2024980 Score = 149 bits (164), Expect = 7e-31 Identities = 286/418 (68%), Gaps = 3/418 (1%) Strand=Plus/Plus Query 93281 AAAGCCCAATCGGCTTTT-TTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339 || |||||||| || ||| ||||| | |||||| ||| || | ||||| || ||| | Sbjct 954643 AAGGCCCAATCTGCCTTTCTTCTTTACACAAGGCGTTGTCTCAACGGCGTTGAAGAGGAA 954702 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 || | || | |||||| ||||| || || | | ||| |||||||||||||| Sbjct 954703 TTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAGTGAGGAGACTGTACATTTCAGAATG 954762 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 | || ||||| ||||||||||| || ||||| | | |||||||| ||||| ||||| Sbjct 954763 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAGTAACGGGCTTCCGTAATCTGAACTTC 954822 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 ||| || | ||| || | |||||||| ||||| ||||| ||||||| | ||||| Sbjct 954823 TTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAGC 954882 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGAT 93578 || | | | | |||| | |||| ||| || || ||||| | | || | | Sbjct 954883 CAGAACACGTGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGA-ATGT 954941 Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 | || ||||| || || || || | ||||| || || || || ||||| | |||| | Sbjct 954942 CCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCCTATACACCT 955001 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAG 93696 ||| | || | |||| || ||||| |||||||| || ||| | ||||| || Sbjct 955002 GCCAAACATCACGGTATTCCATAGGAAAGATGACAAAGCGGCAGGGGGTTTCTTTCAG 955059 >seq15277 Length=4737824 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| ||||||||||||||| | |||||||| Sbjct 3369374 GAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTCTCCATG 3369433 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | |||||||| ||||| |||||||| Sbjct 3369434 GCAATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTG 3369483 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | |||||||||||| |||||||| ||||| || ||| Sbjct 3367440 TCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTGAGCCAGAATATCGATGCA 3367499 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| || || | |||||| Sbjct 3367500 AAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCTACGACACGTTC 3367552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556647014178120