Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq4839 107 2e-18
seq5365 98.7 8e-16
seq20241 89.7 4e-13
>seq4839
Length=4080137
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || || || || || | |||||||| || |||| || || ||||| |||
Sbjct 529645 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 529704
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | || | | || || || || ||||||||||| || || || || ||
Sbjct 529705 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 529764
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| | || || |||||||| |||||| | || ||| |||||| | || || |||||
Sbjct 529765 GCAGAGGCTCATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 529824
Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||| || ||||||||||| | || | || |||| ||| | ||||||
Sbjct 529825 CATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGGT 529873
Score = 98.7 bits (108), Expect = 8e-16
Identities = 141/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || || || || || | |||||||| || |||| || || ||||| |||
Sbjct 528733 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 528792
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | || | | || || || || ||||||||||| || || || || ||
Sbjct 528793 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 528852
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| | || || |||||||| |||||| | || ||| |||||| | || ||||||||
Sbjct 528853 GCAGAGGCTGATTTTTGCCGGGAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 528912
Query 22398 CATTCAAAAAGAATCCACC 22416
||| || ||||| || |||
Sbjct 528913 CATCCAGAAAGAGTCGACC 528931
Score = 98.7 bits (108), Expect = 8e-16
Identities = 141/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || || || || || | |||||||| || |||| || || ||||| |||
Sbjct 529189 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 529248
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | || | | || || || || ||||||||||| || || || || ||
Sbjct 529249 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 529308
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| | || || |||||||| |||||| | || ||| |||||| | || ||||||||
Sbjct 529309 GCAGAGGCTCATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 529368
Query 22398 CATTCAAAAAGAATCCACC 22416
||| || ||||| || |||
Sbjct 529369 CATCCAGAAAGAGTCGACC 529387
Score = 93.3 bits (102), Expect = 4e-14
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || || || || || | |||||||| || |||| || || ||||| |||
Sbjct 528961 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 529020
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | || | | || || || || ||||||||||| || || || || ||
Sbjct 529021 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 529080
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| | | || ||||| ||||||||| | || ||| |||||| | || ||||||||
Sbjct 529081 GCAGAGGTTGATCTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 529140
Query 22398 CATTCAAAAAGAATCCACC 22416
||| || ||||| || |||
Sbjct 529141 CATCCAGAAAGAGTCGACC 529159
Score = 93.3 bits (102), Expect = 4e-14
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || || || || || | |||||||| || |||| || || ||||| |||
Sbjct 529417 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 529476
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | || | | || || || || ||||||||||| || || || || ||
Sbjct 529477 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 529536
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| | | || ||||| ||||||||| | || ||| |||||| | || ||||||||
Sbjct 529537 GCAGAGGTTGATCTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 529596
Query 22398 CATTCAAAAAGAATCCACC 22416
||| || ||||| || |||
Sbjct 529597 CATCCAGAAAGAGTCGACC 529615
>seq5365
Length=1496801
Score = 98.7 bits (108), Expect = 8e-16
Identities = 141/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || ||||| || || || | || || || ||||||| || | || |||
Sbjct 702034 AGATGCAGATCTTTGTGAAGACCTTGATGGGCAAGACCATCACTCTAGAGATCGAGCCCA 701975
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|| ||| || || ||||| ||||| |||||||||||||| | |||||| || |
Sbjct 701974 GTGACACCACTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCAGTCCACCTGACC 701915
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || ||||| || || | ||||||||| | ||||| |||||| | || || || |
Sbjct 701914 AGCAGCGTCTGATTTTCACGGGCAAACAGCTGAAGGATGGCCGCACTCTGTCAGACTATA 701855
Query 22397 ACATTCAAAAAGAATCCAC 22415
| || || |||| |||||
Sbjct 701854 ATATCCAGGAAGAGTCCAC 701836
>seq20241
Length=2711202
Score = 89.7 bits (98), Expect = 4e-13
Identities = 139/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || || || || || | ||||| || || |||| || || ||||| |||
Sbjct 1753355 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1753296
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | || | | || || || || || ||||| || || || || || ||
Sbjct 1753295 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCA 1753236
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| | || || ||||| ||||||||| | || ||| |||||| |||| ||||||||
Sbjct 1753235 GCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGATTACAA 1753176
Query 22398 CATTCAAAAAGAATCCACC 22416
||| || ||||| || |||
Sbjct 1753175 CATCCAGAAAGAGTCGACC 1753157
Score = 89.7 bits (98), Expect = 4e-13
Identities = 139/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || || || || || | ||||| || || |||| || || ||||| |||
Sbjct 1753583 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1753524
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | || | | || || || || || ||||| || || || || || ||
Sbjct 1753523 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCA 1753464
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| | || || ||||| ||||||||| | || ||| |||||| |||| ||||||||
Sbjct 1753463 GCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGATTACAA 1753404
Query 22398 CATTCAAAAAGAATCCACC 22416
||| || ||||| || |||
Sbjct 1753403 CATCCAGAAAGAGTCGACC 1753385
Score = 89.7 bits (98), Expect = 4e-13
Identities = 139/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || || || || || | ||||| || || |||| || || ||||| |||
Sbjct 1753811 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1753752
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | || | | || || || || || ||||| || || || || || ||
Sbjct 1753751 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCA 1753692
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| | || || ||||| ||||||||| | || ||| |||||| |||| ||||||||
Sbjct 1753691 GCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGATTACAA 1753632
Query 22398 CATTCAAAAAGAATCCACC 22416
||| || ||||| || |||
Sbjct 1753631 CATCCAGAAAGAGTCGACC 1753613
Score = 82.4 bits (90), Expect = 6e-11
Identities = 143/206 (69%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272
|| || ||||| ||||| || || || | |||||||| || |||| || || |||||
Sbjct 1754044 GTCAAAATGCAGATTTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAG 1753985
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
||| || ||| | || | | || || || || || | || || || || |||
Sbjct 1753984 CCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATA--GAAGGCATCCCCCCC 1753927
Query 22333 --GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390
|| || || | || || ||||| ||||||||| | || ||| |||||| |||| |
Sbjct 1753926 CTGACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTG 1753867
Query 22391 ATTACAACATTCAAAAAGAATCCACC 22416
|||||||||| || ||||| || |||
Sbjct 1753866 ATTACAACATCCAGAAAGAGTCGACC 1753841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419570889644845
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |