Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq11056 104 2e-17 seq451 104 2e-17 seq2328 102 7e-17 seq14188 96.9 3e-15 seq20241 95.1 1e-14 seq9861 89.7 4e-13 seq4839 89.7 4e-13 >seq11056 Length=1110308 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||||||| || ||| | || || || |||||||||||||| || | Sbjct 356876 CCACCACGAAGTCTCAACACAGGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 356817 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||| |||| || ||||| |||| || | || ||||| |||||| Sbjct 356816 AGAGTACGTCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 356757 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| ||||| ||||| ||| | ||| | || || | || || ||| Sbjct 356756 ATTCCTTCCTTGTCCTGGATCTTGGCCATTACATTTTCTATTGTATCCGAGGGTTTGACC 356697 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || || ||||||||||| Sbjct 356696 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 356650 >seq451 Length=5792110 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||||||| || | ||| | || || || |||||| |||||| || | Sbjct 1082993 CCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAGTGTTGTGGTCAGAC 1082934 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||| |||| || ||||| |||| | | || ||||| |||||| Sbjct 1082933 AGAGTACGTCCATCTTCCCGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGGTCAGGAGGA 1082874 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| ||||| ||||| |||| | ||| | | || | || |||||| Sbjct 1082873 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATCATATCCGAGGGTTCGACC 1082814 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || || || || || ||||| || || || ||||||||||| Sbjct 1082813 TCGAGAGTGACGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 1082767 >seq2328 Length=1860655 Score = 102 bits (112), Expect = 7e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || |||||| ||||||| || Sbjct 1240009 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGA 1240068 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || || ||||| |||| || | || ||||| ||||| Sbjct 1240069 CAAAGTACGTCCATCTTCCAGGTGCTTGCCAGCAAAGATCAGTCT-TGCTGGTCAGGAGG 1240127 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| |||| ||||| ||||| |||| | ||| || || | || |||||| Sbjct 1240128 AATTACTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTGTTGTATCTGAGGGTTCGAC 1240187 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || || ||||||||||| Sbjct 1240188 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 1240235 >seq14188 Length=5250308 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | | | | | || || |||||| |||||| || Sbjct 4004073 ACCACCACGAAGTCTCAACACAAGACGAAGGGCGGACTCCTTTTGAGTGTTGTGGTCAGA 4004132 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| |||| || ||||| |||| || | || ||||| ||||| Sbjct 4004133 CAGAGTACGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 4004192 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| || | | ||| | || || | || |||||| Sbjct 4004193 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCTATTGTATCCGAGGGTTCGAC 4004252 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || || ||||||||||| Sbjct 4004253 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 4004300 >seq20241 Length=2711202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || ||||| || Sbjct 1753158 GTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCT 1753217 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || |||||||| || || ||||| || Sbjct 1753218 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 1753277 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 1753278 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1753337 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1753338 TTCACGAAGATCTGCAT 1753354 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || ||||| || Sbjct 1753386 GTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCT 1753445 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || |||||||| || || ||||| || Sbjct 1753446 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 1753505 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 1753506 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1753565 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1753566 TTCACGAAGATCTGCAT 1753582 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || ||||| || Sbjct 1753614 GTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCT 1753673 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || |||||||| || || ||||| || Sbjct 1753674 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 1753733 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 1753734 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 1753793 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1753794 TTCACGAAGATCTGCAT 1753810 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || ||||| || Sbjct 1753842 GTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCT 1753901 Query 114246 GCGTAGATGAGACGCTGTTGGTC--CGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTT 114303 || ||||||| | ||| ||||| || || ||||||||| | || ||||| | Sbjct 1753902 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGGGATGCCTTCTATCCTGG--ATCTTGGCCT 1753959 Query 114304 TTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAG 114363 | | | || | |||||| ||| || || |||| ||| | || || |||||||| | Sbjct 1753960 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGG 1754019 Query 114364 TTTTTACAAAAATCTGCAT 114382 | || || ||||||||||| Sbjct 1754020 TCTTCACGAAAATCTGCAT 1754038 >seq9861 Length=3422124 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| |||| |||||||| | | ||| | ||||| || ||||||||||||| || Sbjct 2119804 TACCAGCACGAAGTCTCAACAAAAGATGAAGAGTAGACTCCTTTTGAATGTTGTGGTCAG 2119745 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || | |||| |||||| |||| || ||||| || | || || || ||||| | || Sbjct 2119744 ACAAAATACGTCCATCTTCCCGTTGCTTGCCAGCAAAGGTCAGTCGTTGCTGGTCAGAAG 2119685 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| |||| || || ||||| |||| | ||| | || || | || ||||| Sbjct 2119684 GAATTACTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCGA 2119625 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || | || || || ||| | | || |||||||||||||| Sbjct 2119624 CCTCGAGAGTGATGGTCTTCCCTGTCCGGATCTTCACAAAAATCTGCAT 2119576 >seq4839 Length=4080137 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || ||||| || Sbjct 529386 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTCCCG 529327 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || ||||| || ||||| ||||| || Sbjct 529326 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 529267 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || || |||||||| || Sbjct 529266 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTC 529207 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 529206 TTCACGAAGATCTGCAT 529190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419977137523356