Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_009016.1
Length=38197
Score E
Sequences producing significant alignments: (Bits) Value
seq16268 235 1e-57
>seq16268
Length=3253
Score = 235 bits (260), Expect = 1e-57
Identities = 385/553 (70%), Gaps = 20/553 (4%)
Strand=Plus/Plus
Query 14785 CGCCGTCCACCATCGCCATGGGCGCAGTGGCCGCGGTGAAGCCGTGGGAGTCTCCAGGCA 14844
|||| ||| | | ||||| | |||| ||||| ||| |||| |||||| ||||| |
Sbjct 2413 CGCCATCCTCGCTGGCCATCGCCGCATTGGCCAAGGTCAAGCAGTGGGAAAGCCCAGGTA 2472
Query 14845 ACCAAGGCGTGCTGATTC-AGGATGTGGCTCGAGTCATCGACTACAACATCCTGGACAAG 14903
|||| || | || | |||| || | || || |||| ||||||||||| ||||
Sbjct 2473 ACCA-GGTGACCTTCGCCGAGGACGTTTCCCGCGTGGTCGAGTACAACATCCTCGACACC 2531
Query 14904 AGCACCGAGGGTGACCTGCTCAACCGTAACGGCGTGAGCTACTTTGCTCGCACTAGCATG 14963
|||||| || |||||||||||||| ||||||||||||||| |||||||| | | |
Sbjct 2532 TCCACCGAAGGCGACCTGCTCAACCGCTACGGCGTGAGCTACTACGCTCGCACCATCCTC 2591
Query 14964 GGCGGCTTTAGTCTTATCGGCAACCGCACGGTGACGGGCAAGTTTATCTCGTTTGTCGGC 15023
|||||||| || | || |||||| | | || ||| ||||||
Sbjct 2592 GGCGGCTTCTCGCTGCTGGGTAACCGCTCCATCACCGGCC--------------GTCGGC 2637
Query 15024 CTCGAGGACGCCATCGCTCGCAAGCTGG--AAGCAGCCAGCCAGCGTGCTATGTCCAAGC 15081
|| || || |||||| |||||||||| ||| || ||||| || ||| |||||
Sbjct 2638 CTGGAAGATGCCATCAGCCGCAAGCTGGTCAAG--GCTGGCCAGAAAGCCATGGCCAAGA 2695
Query 15082 AGCTGACCAAGAGCTTCATGGAGCAGGAAATCAAGAAGATTAACCTGTTCATGCAAGACC 15141
| || |||||| ||||||||| ||||| ||||| || ||| | ||||| ||
Sbjct 2696 ACCTCACCAAGTCCTTCATGGACCAGGAGGTCAAGCGCATCAACGACTGGCTGCAAACCC 2755
Query 15142 TTGTCGCGGCTGAAATTATCCCAGGCGGTGAAGTGTACCTGCACCCGACTCTTAACACGG 15201
| || || | |||| ||||| ||||| ||||||||||| ||| || |||| |
Sbjct 2756 TGGTGGCCGACGAAACCATCCCCGGCGGCAGCGTGTACCTGCATCCGGAGCTGAACAGCG 2815
Query 15202 TCGAGCGGTATAAGAACGGCTCCTGGTACATCGTGATCGATTACGGCCGTTACAGCCCGA 15261
||||| ||| || |||||| |||||| |||||| ||||| |||||||| ||| ||||
Sbjct 2816 TCGAGAAGTACAAAAACGGCACCTGGTTCATCGTCATCGACTACGGCCGCTACGCACCGA 2875
Query 15262 ACGAGCACATGATTTTCCACCTGAATGCGGTAGACCGCATCGTCGAAGAGTTCATTGAGG 15321
|||| |||||| ||| || || || || || ||| |||| ||||| | ||||
Sbjct 2876 ACGAACACATGGTTTATCAACTCAACGCCCGCGATGAAATCATCGAGCAGTTCCTGGAGG 2935
Query 15322 AGGTGCTGTAATG 15334
| || || |||||
Sbjct 2936 ACGTTCTCTAATG 2948
Score = 120 bits (132), Expect = 7e-23
Identities = 240/349 (69%), Gaps = 9/349 (3%)
Strand=Plus/Plus
Query 11223 CAACGGGTGGCAATTGTTGACTATGAAGAGCTGAGTCCGACCCAGCTGCGCATGGGGGCC 11282
||||||||||| ||||| || || ||||| ||| | | ||| || | |||| ||
Sbjct 199 CAACGGGTGGCCATTGTCGATTACGAAGACCTGGGCGAGCGCCAACTCAGAATGGCCGCG 258
Query 11283 AAGTTTACCGGCACCCTTGAGTATGAGGTTCGGGAGATCGGCTTTTACCTCG--AGTCCG 11340
|||| ||| | || |||||| || | ||| |||| |||||||||| ||| |
Sbjct 259 CTGTTTGATGGCGACGGCGAATATGAGATTGGCGAGTTCGGGTTTTACCTCGCCAGT--G 316
Query 11341 GCACCTTGCTGGCCGTGTACTCGGTACCGAACACCCTGCTCACGTATAAGTCGGC--CAA 11398
||||||||||||| ||||| || || || |||| |||||||| |||| |
Sbjct 317 GCACCTTGCTGGCGGTGTATTCCGTGGCG-GGGGGTTGCTGACGTATAAAGCGGCGGCGG 375
Query 11399 CAGCAGCTGGATCCAGAAGTTCACTCTGGATATCTCGCCGCTGCCAACTGACAGCGTGAC 11458
| || | | | | |||||||| || |||||| | |||||| |||| | || ||||||||
Sbjct 376 C-GCGGGT-GCTGCAGAAGTTTACGCTGGATGTTTCGCCGTTGCCGGCGGATAGCGTGAC 433
Query 11459 CGTCGTGGTCGGTACGGAAAACATCAATCTGATGATGACCGAGGAACTGGCCACCATGGC 11518
|| || || || ||||||| ||||| | | || | || || || || | ||||
Sbjct 434 AGTGGTTGTAGGGGCGGAAAATTTCAATATTCTTATTGCTGAAGAGCTCGCATCAGTGGC 493
Query 11519 CACGGCCCAGATTGACAACATGACCCGGCACGTTGAGCTGCTGTTCCGC 11567
|| ||| | || || || ||| |||| || ||| ||||||| |||
Sbjct 494 GACTGCCAATATAGATAATATGGCCCGTCATCTTGGTGTGCTGTTTCGC 542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122064264860054
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |