Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_009016.1 Length=38197 Score E Sequences producing significant alignments: (Bits) Value seq16268 235 1e-57 >seq16268 Length=3253 Score = 235 bits (260), Expect = 1e-57 Identities = 385/553 (70%), Gaps = 20/553 (4%) Strand=Plus/Plus Query 14785 CGCCGTCCACCATCGCCATGGGCGCAGTGGCCGCGGTGAAGCCGTGGGAGTCTCCAGGCA 14844 |||| ||| | | ||||| | |||| ||||| ||| |||| |||||| ||||| | Sbjct 2413 CGCCATCCTCGCTGGCCATCGCCGCATTGGCCAAGGTCAAGCAGTGGGAAAGCCCAGGTA 2472 Query 14845 ACCAAGGCGTGCTGATTC-AGGATGTGGCTCGAGTCATCGACTACAACATCCTGGACAAG 14903 |||| || | || | |||| || | || || |||| ||||||||||| |||| Sbjct 2473 ACCA-GGTGACCTTCGCCGAGGACGTTTCCCGCGTGGTCGAGTACAACATCCTCGACACC 2531 Query 14904 AGCACCGAGGGTGACCTGCTCAACCGTAACGGCGTGAGCTACTTTGCTCGCACTAGCATG 14963 |||||| || |||||||||||||| ||||||||||||||| |||||||| | | | Sbjct 2532 TCCACCGAAGGCGACCTGCTCAACCGCTACGGCGTGAGCTACTACGCTCGCACCATCCTC 2591 Query 14964 GGCGGCTTTAGTCTTATCGGCAACCGCACGGTGACGGGCAAGTTTATCTCGTTTGTCGGC 15023 |||||||| || | || |||||| | | || ||| |||||| Sbjct 2592 GGCGGCTTCTCGCTGCTGGGTAACCGCTCCATCACCGGCC--------------GTCGGC 2637 Query 15024 CTCGAGGACGCCATCGCTCGCAAGCTGG--AAGCAGCCAGCCAGCGTGCTATGTCCAAGC 15081 || || || |||||| |||||||||| ||| || ||||| || ||| ||||| Sbjct 2638 CTGGAAGATGCCATCAGCCGCAAGCTGGTCAAG--GCTGGCCAGAAAGCCATGGCCAAGA 2695 Query 15082 AGCTGACCAAGAGCTTCATGGAGCAGGAAATCAAGAAGATTAACCTGTTCATGCAAGACC 15141 | || |||||| ||||||||| ||||| ||||| || ||| | ||||| || Sbjct 2696 ACCTCACCAAGTCCTTCATGGACCAGGAGGTCAAGCGCATCAACGACTGGCTGCAAACCC 2755 Query 15142 TTGTCGCGGCTGAAATTATCCCAGGCGGTGAAGTGTACCTGCACCCGACTCTTAACACGG 15201 | || || | |||| ||||| ||||| ||||||||||| ||| || |||| | Sbjct 2756 TGGTGGCCGACGAAACCATCCCCGGCGGCAGCGTGTACCTGCATCCGGAGCTGAACAGCG 2815 Query 15202 TCGAGCGGTATAAGAACGGCTCCTGGTACATCGTGATCGATTACGGCCGTTACAGCCCGA 15261 ||||| ||| || |||||| |||||| |||||| ||||| |||||||| ||| |||| Sbjct 2816 TCGAGAAGTACAAAAACGGCACCTGGTTCATCGTCATCGACTACGGCCGCTACGCACCGA 2875 Query 15262 ACGAGCACATGATTTTCCACCTGAATGCGGTAGACCGCATCGTCGAAGAGTTCATTGAGG 15321 |||| |||||| ||| || || || || || ||| |||| ||||| | |||| Sbjct 2876 ACGAACACATGGTTTATCAACTCAACGCCCGCGATGAAATCATCGAGCAGTTCCTGGAGG 2935 Query 15322 AGGTGCTGTAATG 15334 | || || ||||| Sbjct 2936 ACGTTCTCTAATG 2948 Score = 120 bits (132), Expect = 7e-23 Identities = 240/349 (69%), Gaps = 9/349 (3%) Strand=Plus/Plus Query 11223 CAACGGGTGGCAATTGTTGACTATGAAGAGCTGAGTCCGACCCAGCTGCGCATGGGGGCC 11282 ||||||||||| ||||| || || ||||| ||| | | ||| || | |||| || Sbjct 199 CAACGGGTGGCCATTGTCGATTACGAAGACCTGGGCGAGCGCCAACTCAGAATGGCCGCG 258 Query 11283 AAGTTTACCGGCACCCTTGAGTATGAGGTTCGGGAGATCGGCTTTTACCTCG--AGTCCG 11340 |||| ||| | || |||||| || | ||| |||| |||||||||| ||| | Sbjct 259 CTGTTTGATGGCGACGGCGAATATGAGATTGGCGAGTTCGGGTTTTACCTCGCCAGT--G 316 Query 11341 GCACCTTGCTGGCCGTGTACTCGGTACCGAACACCCTGCTCACGTATAAGTCGGC--CAA 11398 ||||||||||||| ||||| || || || |||| |||||||| |||| | Sbjct 317 GCACCTTGCTGGCGGTGTATTCCGTGGCG-GGGGGTTGCTGACGTATAAAGCGGCGGCGG 375 Query 11399 CAGCAGCTGGATCCAGAAGTTCACTCTGGATATCTCGCCGCTGCCAACTGACAGCGTGAC 11458 | || | | | | |||||||| || |||||| | |||||| |||| | || |||||||| Sbjct 376 C-GCGGGT-GCTGCAGAAGTTTACGCTGGATGTTTCGCCGTTGCCGGCGGATAGCGTGAC 433 Query 11459 CGTCGTGGTCGGTACGGAAAACATCAATCTGATGATGACCGAGGAACTGGCCACCATGGC 11518 || || || || ||||||| ||||| | | || | || || || || | |||| Sbjct 434 AGTGGTTGTAGGGGCGGAAAATTTCAATATTCTTATTGCTGAAGAGCTCGCATCAGTGGC 493 Query 11519 CACGGCCCAGATTGACAACATGACCCGGCACGTTGAGCTGCTGTTCCGC 11567 || ||| | || || || ||| |||| || ||| ||||||| ||| Sbjct 494 GACTGCCAATATAGATAATATGGCCCGTCATCTTGGTGTGCTGTTTCGC 542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122064264860054