Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq20687 87.8 3e-12 seq15277 84.2 4e-11 >seq20687 Length=1308170 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||||||||| || || ||||| ||||| |||||||||||||| | |||||| ||| Sbjct 989751 CATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGGTCCCTGGCACGCTGCTCTTCCTT 989692 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 || ||||||||| | | || | || ||||||| ||| | ||||| ||||||| ||| Sbjct 989691 TCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGCTCCAGGTA 989632 Query 245131 GACAGCGAGGGCGCCGGGCCGCT 245153 | || | || || || |||| Sbjct 989631 AATGGCAAATGCCCCAGGTCGCT 989609 >seq15277 Length=4737824 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| |||| || || || |||||||| || || | || || || || |||||| Sbjct 3367543 GTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 3367484 Query 42768 CTC-AAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 ||| || | ||| | ||||||||| ||||| || || || ||||| || ||||| || Sbjct 3367483 CTCAAAAAACGAGGACT-GATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 3367425 Query 42827 CGAGG 42831 ||||| Sbjct 3367424 CGAGG 3367420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943976656376880