Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_009235.2
Length=48674
Score E
Sequences producing significant alignments: (Bits) Value
seq14219 104 7e-18
seq15216 80.6 8e-11
seq8680 80.6 8e-11
>seq14219
Length=2704
Score = 104 bits (114), Expect = 7e-18
Identities = 227/333 (68%), Gaps = 14/333 (4%)
Strand=Plus/Minus
Query 17955 TGGGACGGTACGTTCAAGGCAGCATGGACGAACAATCCGGCGTGGGTCTACTACGGCCTA 18014
||||| || || ||||| | || | || ||||| ||||| ||| ||| ||||| | |
Sbjct 1782 TGGGATGGCACATTCAAAGAGGCCTATACCAACAACCCGGCCTGGATCTTCTACGACTTG 1723
Query 18015 CTTCTCGACAAGCTCAACGGATTGGGTGACCGTGTCGATGCTTCGATGGTCGATAAGTGG 18074
| || || | |||| | || ||||| |||| || | ||||| ||| |||
Sbjct 1722 GTGCTGCACCCATACTACGGCCTCGGCGACCGCATCGACGCAACAATGGTTGATCGCTGG 1663
Query 18075 GCGCTGTACGCAATCGCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAGGGCGGCAAG 18134
|||| || ||||||| ||||||||| | | ||| | ||||| ||||| |||| |
Sbjct 1662 TCGCTCTATCGGATCGCGCAGTACTGCGACCAGATGGTGCCGGACGGAAAGGGGGGCATG 1603
Query 18135 GAGCCGCGCTTCACCTGCAACTGCGTGCTTC-AGACGCGCGCGGACGC--ATTCAAGGTG 18191
||||| ||||| |||||||||| || |||| ||| || || || || || || |||
Sbjct 1602 GAGCCACGCTTTACCTGCAACTT-GTACTTCCAGAAGCAAGCTGAAGCTTATGCA--GTG 1546
Query 18192 GTACAGGATCTCGCGAGCGTCTTTCGCGGCATTTCGTACTGGGGCG----CCGGGTCGGT 18247
| ||||| || || |||| | |||| | | ||||||| || || | ||| |
Sbjct 1545 CTCCAGGACCTGGCCTCGATCTTCCACGGCCTGGCCTACTGGGACGGAAGCCAGATCG-T 1487
Query 18248 GGTCGCGTCGGCCGATATGCCGTCCGATCCGGT 18280
|||| |||||||||||| ||| |||||
Sbjct 1486 GGTCAAC---GCCGATATGCCGGGCGACCCGGT 1457
>seq15216
Length=457
Score = 80.6 bits (88), Expect = 8e-11
Identities = 76/97 (78%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 18059 GATGGTCGATAAGTGGGCGCTGTACGCAATCGCGCGTTACTGCGACGAACTCGTGTCCGA 18118
|||||| || ||||||| ||| ||| || | | || |||||| |||| || | ||
Sbjct 301 GATGGTGGACAAGTGGGAGCTTTACCGGATTTCCCAGTATTGCGACCAACTGGTACCGGA 242
Query 18119 CGGGAAGGGCGGCAAGGAGCCGCGCTTCACCTGCAAC 18155
||||||||| ||| ||||||||||||||| |||||||
Sbjct 241 CGGGAAGGGTGGCCAGGAGCCGCGCTTCATCTGCAAC 205
>seq8680
Length=3046
Score = 80.6 bits (88), Expect = 8e-11
Identities = 73/92 (79%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 24883 TTCGGCGCCCCGACGTGGTGATTGTCAAGGACGGATCTCTGTCGCCAACTCAGGACAACA 24942
|||| || ||||| |||||||| |||||||||| | ||||||||||||||||||
Sbjct 1582 TTCGCCGGCCCGATGTGGTGATCGTCAAGGACGCCAGCAAGCCGCCAACTCAGGACAACA 1523
Query 24943 TCAAGAGCGTGGTGGAGATTAAATTCCCGCCT 24974
||||| ||||||||||| || || || |||
Sbjct 1522 TCAAGCAAGTGGTGGAGATGAAGTTTCCACCT 1491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 155578437216216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |