Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq14219 104 7e-18 seq15216 80.6 8e-11 seq8680 80.6 8e-11 >seq14219 Length=2704 Score = 104 bits (114), Expect = 7e-18 Identities = 227/333 (68%), Gaps = 14/333 (4%) Strand=Plus/Minus Query 17955 TGGGACGGTACGTTCAAGGCAGCATGGACGAACAATCCGGCGTGGGTCTACTACGGCCTA 18014 ||||| || || ||||| | || | || ||||| ||||| ||| ||| ||||| | | Sbjct 1782 TGGGATGGCACATTCAAAGAGGCCTATACCAACAACCCGGCCTGGATCTTCTACGACTTG 1723 Query 18015 CTTCTCGACAAGCTCAACGGATTGGGTGACCGTGTCGATGCTTCGATGGTCGATAAGTGG 18074 | || || | |||| | || ||||| |||| || | ||||| ||| ||| Sbjct 1722 GTGCTGCACCCATACTACGGCCTCGGCGACCGCATCGACGCAACAATGGTTGATCGCTGG 1663 Query 18075 GCGCTGTACGCAATCGCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAGGGCGGCAAG 18134 |||| || ||||||| ||||||||| | | ||| | ||||| ||||| |||| | Sbjct 1662 TCGCTCTATCGGATCGCGCAGTACTGCGACCAGATGGTGCCGGACGGAAAGGGGGGCATG 1603 Query 18135 GAGCCGCGCTTCACCTGCAACTGCGTGCTTC-AGACGCGCGCGGACGC--ATTCAAGGTG 18191 ||||| ||||| |||||||||| || |||| ||| || || || || || || ||| Sbjct 1602 GAGCCACGCTTTACCTGCAACTT-GTACTTCCAGAAGCAAGCTGAAGCTTATGCA--GTG 1546 Query 18192 GTACAGGATCTCGCGAGCGTCTTTCGCGGCATTTCGTACTGGGGCG----CCGGGTCGGT 18247 | ||||| || || |||| | |||| | | ||||||| || || | ||| | Sbjct 1545 CTCCAGGACCTGGCCTCGATCTTCCACGGCCTGGCCTACTGGGACGGAAGCCAGATCG-T 1487 Query 18248 GGTCGCGTCGGCCGATATGCCGTCCGATCCGGT 18280 |||| |||||||||||| ||| ||||| Sbjct 1486 GGTCAAC---GCCGATATGCCGGGCGACCCGGT 1457 >seq15216 Length=457 Score = 80.6 bits (88), Expect = 8e-11 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 18059 GATGGTCGATAAGTGGGCGCTGTACGCAATCGCGCGTTACTGCGACGAACTCGTGTCCGA 18118 |||||| || ||||||| ||| ||| || | | || |||||| |||| || | || Sbjct 301 GATGGTGGACAAGTGGGAGCTTTACCGGATTTCCCAGTATTGCGACCAACTGGTACCGGA 242 Query 18119 CGGGAAGGGCGGCAAGGAGCCGCGCTTCACCTGCAAC 18155 ||||||||| ||| ||||||||||||||| ||||||| Sbjct 241 CGGGAAGGGTGGCCAGGAGCCGCGCTTCATCTGCAAC 205 >seq8680 Length=3046 Score = 80.6 bits (88), Expect = 8e-11 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 24883 TTCGGCGCCCCGACGTGGTGATTGTCAAGGACGGATCTCTGTCGCCAACTCAGGACAACA 24942 |||| || ||||| |||||||| |||||||||| | |||||||||||||||||| Sbjct 1582 TTCGCCGGCCCGATGTGGTGATCGTCAAGGACGCCAGCAAGCCGCCAACTCAGGACAACA 1523 Query 24943 TCAAGAGCGTGGTGGAGATTAAATTCCCGCCT 24974 ||||| ||||||||||| || || || ||| Sbjct 1522 TCAAGCAAGTGGTGGAGATGAAGTTTCCACCT 1491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155578437216216