Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq17408 98.7 9e-16 seq26173 96.9 3e-15 >seq17408 Length=748846 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||| |||||||| ||||| || || || |||| ||| Sbjct 535778 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 535837 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 |||||||| |||||||| |||||||| ||||| |||||||||| | || ||||| || Sbjct 535838 ATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAAAACTGG 535897 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCAT 20397 || | ||| || || || || ||||| Sbjct 535898 CAAAGGGCGTGGCACGGAGGTAGGGCCAT 535926 >seq26173 Length=4939203 Score = 96.9 bits (106), Expect = 3e-15 Identities = 114/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||| ||||| ||||||||||| ||||| | | | || || || | || || || | || Sbjct 2187529 GTAAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 2187470 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 |||| ||| || || | |||| ||||||||| ||||| || | || |||| ||| | Sbjct 2187469 TGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGACACACCCAGGCCCCT 2187410 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAG 20343 |||||| ||| |||| |||||||| ||||| || Sbjct 2187409 GTCTCCTGACTTCTGGTACAGCTG-CAGGACAG 2187378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441203351464920