Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq29423 105 7e-18 >seq29423 Length=3049034 Score = 105 bits (116), Expect = 7e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| ||| |||| || |||||||| || ||||||||||| || | Sbjct 2663940 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 2663881 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| |||||||| |||| | ||| | |||||| || || || || |||| || | Sbjct 2663880 TGCCGCAGGCTGAGGACCATGGCCCCAACATCAAAGAGCACGTGAACTCCCTGGGGGAGA 2663821 Query 9981 ATCTAAAGACCCTACGGCTCCGCCTG 10006 | || |||||||| |||| || ||| Sbjct 2663820 AGCTGAAGACCCTCAGGCTGCGGCTG 2663795 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || || || | ||||||||||||||||| |||||||| || || ||||||| Sbjct 2661590 AGCTCCAAGACAAGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 2661531 Query 10140 TAGAAGCATACATGACAA 10157 ||||||| |||||||||| Sbjct 2661530 TAGAAGCCTACATGACAA 2661513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552504605111520