Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq20241 134 3e-26 seq14188 127 5e-24 seq451 118 3e-21 seq24420 114 3e-20 seq29157 107 5e-18 seq24771 102 2e-16 seq10790 102 2e-16 seq5365 89.7 1e-12 >seq20241 Length=2711202 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | ||| || || || | || ||||| ||||| || || || | | Sbjct 1753356 CCACCTCTGAGGCGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 1753415 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | ||||| ||||| ||||| || | ||| || | ||| Sbjct 1753416 AGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1753475 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||||||||| || || |||||||| || || | || || | || || Sbjct 1753476 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 1753535 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 1753536 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1753582 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | ||| || || || | || ||||| ||||| || || || | | Sbjct 1753584 CCACCTCTGAGGCGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 1753643 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | ||||| ||||| ||||| || | ||| || | ||| Sbjct 1753644 AGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1753703 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||||||||| || || |||||||| || || | || || | || || Sbjct 1753704 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 1753763 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 1753764 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1753810 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | ||| ||||| || ||||| | ||||| ||||| ||| Sbjct 1753164 TCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAG 1753223 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||| ||||||||||| || || |||||||| Sbjct 1753224 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1753283 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 1753284 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 1753343 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1753344 AAGATCTGCAT 1753354 >seq14188 Length=5250308 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||| ||| | | || ||||| | || | ||| | Sbjct 4004074 CCACCACGAAGTCTCAACACAAGACGAAGGGCGGACTCCTTTTGAGTGTTGTGGTCAGAC 4004133 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 || || ||||| ||||| | || || || || |||||||| | |||| | || | Sbjct 4004134 AGAGTACGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 4004190 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || |||||||| || || |||||||||||||| | ||| | ||| Sbjct 4004191 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCTATTGTATCCGAGGGTTCG 4004250 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 4004251 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 4004300 >seq451 Length=5792110 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| | || | ||| | Sbjct 1082993 CCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAGTGTTGTGGTCAGAC 1082934 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 || || ||||| ||||| ||| || || || |||||| | | |||| | || | Sbjct 1082933 AGAGTACGTCCATCTTCCCGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGGTCAGGA--- 1082877 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || |||||||| || || || ||||||||||| ||| | ||| Sbjct 1082876 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATCATATCCGAGGGTTCG 1082817 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 1082816 ACCTCGAGAGTGACGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 1082767 >seq24420 Length=3268280 Score = 114 bits (126), Expect = 3e-20 Identities = 141/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | ||||| ||||| ||| Sbjct 2497482 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCATCTGTTTGCCTGCAAAG 2497541 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | || | ||| || | ||||| ||||||||||||||||| || || ||||| || Sbjct 2497542 AGGAGCCTCTGCTG-GTCGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTC 2497600 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | ||||| || || ||||| ||||| | |||||| ||||| ||| Sbjct 2497601 TC---AGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCAGGTCAGGGTCTTCACG 2497657 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2497658 AAGATCTGCAT 2497668 >seq29157 Length=6873498 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| | | || | || || || | ||| || || || ||| Sbjct 2566414 TCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAAG 2566473 Query 288343 ATCAGAC---GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | |||| | || | ||||||||||||||||| ||||| || || || || Sbjct 2566474 ATCAGTCTTTGCTGGTCAGGA---GGGATTCCTTCTTTATCTTGGATCTTGGCCTTTACA 2566530 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 |||||||| | ||| | ||| || | ||| ||||| |||||||| ||||| ||||| Sbjct 2566531 TTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTTC 2566590 Query 288460 ACGAATATCTGCAT 288473 | ||| |||||||| Sbjct 2566591 ATGAAAATCTGCAT 2566604 >seq24771 Length=4348290 Score = 102 bits (112), Expect = 2e-16 Identities = 160/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | | ||||||| ||| || ||||| | || ||| | Sbjct 727354 CCACCACGAAGTCTCAACGCAAGATGAAGGGTGGACTCCTTTTGAGTGTTGCGGTCAGAC 727295 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 || || ||||| ||||| | ||| || || || |||||||| | |||| | || | Sbjct 727294 AGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 727238 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || | || || |||||| | ||| | ||| Sbjct 727237 GGAATTCCTTCCTTATCCTGGATCTTGACCTTTACCTTTTCTGTCATATCCGAGGGTTCG 727178 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 || ||||| |||| |||||||| |||| ||||| ||||| |||||| Sbjct 727177 ACCTCGAGAGTGACGGTCTTCCCTTTCAGGGTCTTCACGAAAATCTGC 727130 >seq10790 Length=2053270 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | | |||| |||||||| | ||||| ||||| || Sbjct 1303325 TCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCCAGCTGTTTGCCTGCAAAC 1303266 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | || | ||| || | ||||| ||||||||||||||||| || || ||||| || Sbjct 1303265 GTGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTC 1303206 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 | || | || || | || || || || ||||| ||||| || ||||| ||||| || Sbjct 1303205 TTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCCCG 1303146 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1303145 AAGATCTGCAT 1303135 >seq5365 Length=1496801 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | || | ||| |||| |||||||||||||| | Sbjct 701806 CCACCTCGCAGACGAAGCACCAAGTGCAGAGTGGACTCTTCCTGGATATTATAGTCTGAC 701865 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || | | ||||| || | ||| ||||||||||| || | ||| Sbjct 701866 AGAGTGCGGCCATCCTTCAGCTGTTTGCCCGTGAAAATCAGACGCTGCTGGTCAGGTGGA 701925 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 | || || || || |||||||| ||||| || || || | | || || | || | Sbjct 701926 CTGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGATC 701985 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || ||| ||||| || || |||||||| Sbjct 701986 TCTAGAGTGATGGTCTTGCCCATCAAGGTCTTCACAAAGATCTGCAT 702032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179190193828414