Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_010342.1 Length=39245 Score E Sequences producing significant alignments: (Bits) Value seq16268 242 9e-60 seq4450 89.7 1e-13 >seq16268 Length=3253 Score = 242 bits (268), Expect = 9e-60 Identities = 355/504 (70%), Gaps = 20/504 (4%) Strand=Plus/Plus Query 15026 AACGTGTTCGTTGCGCCCTCGGTGCATGCGATCGGCTGCCTGGCGGCGGTGCAGCCGTGG 15085 ||||||||| | |||| || || || |||| | |||| ||| ||| |||| Sbjct 2400 AACGTGTTCCTGTCGCCATCCTCGCTGGCCATCGCCGCATTGGCCAAGGTCAAGCAGTGG 2459 Query 15086 CAAAGCCCCGGCAACCAGGGCGTGTTGATCCAGGGCGTCGCGCGCCACGTGGATTACAAC 15145 ||||||| || ||||||| || | ||| ||| | ||| || || |||||| Sbjct 2460 GAAAGCCCAGGTAACCAGGTGACCTTCGCCGAGGACGTTTCCCGCGTGGTCGAGTACAAC 2519 Query 15146 ATTCTCGACAAGTCGACTGATGGCGACCTGCTCAACCGCTACGGCATCAGCTACTACGCG 15205 || ||||||| || || || |||||||||||||||||||||||| | ||||||||||| Sbjct 2520 ATCCTCGACACCTCCACCGAAGGCGACCTGCTCAACCGCTACGGCGTGAGCTACTACGCT 2579 Query 15206 CGCACCAGCCTGGGCGGGTTCTCGCTGATCGGCAACCGCACGGTGACCGGCGAGTTTATC 15265 ||||||| ||| ||||| ||||||||| | || |||||| | | |||||| Sbjct 2580 CGCACCATCCTCGGCGGCTTCTCGCTGCTGGGTAACCGCTCCATCACCGGC--------- 2630 Query 15266 TCGCACGTAGGCCTTGAAGACGCCATCGGTCGCAAGATCGTCGGCGCGTCGCAGAAGGCC 15325 ||| ||||| ||||| |||||| | |||||| | ||| || ||||| ||| Sbjct 2631 -----CGTCGGCCTGGAAGATGCCATCAGCCGCAAGCTGGTCAAGGCTGGCCAGAAAGCC 2685 Query 15326 ATGGCGCAGAACTTGACCAAGAGCTTCATGGAGCAGGAGGT---GCGCAAGGTTGATGCG 15382 ||||| ||||| | |||||| ||||||||| |||||||| ||||| | | | Sbjct 2686 ATGGCCAAGAACCTCACCAAGTCCTTCATGGACCAGGAGGTCAAGCGCA---TCAACGAC 2742 Query 15383 TTCGTTCAGGATCAGGTTGCTGCTGAGATCATCCCTGGTGGTCGTGTCTATCTGCATCCT 15442 | | || | ||| || | || | |||||| || || | || || |||||||| Sbjct 2743 TGGCTGCAAACCCTGGTGGCCGACGAAACCATCCCCGGCGGCAGCGTGTACCTGCATCCG 2802 Query 15443 GACCTCAACACGGTCGAGCGCTATAAAAACGGTAGCTGGTACATCGTCATCGAGTACGGC 15502 || || |||| |||||| || |||||||| | ||||| |||||||||||| |||||| Sbjct 2803 GAGCTGAACAGCGTCGAGAAGTACAAAAACGGCACCTGGTTCATCGTCATCGACTACGGC 2862 Query 15503 CGCTATTCCCCCAATGAGCACATG 15526 ||||| | || || || |||||| Sbjct 2863 CGCTACGCACCGAACGAACACATG 2886 >seq4450 Length=963 Score = 89.7 bits (98), Expect = 1e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 16653 CGTGCCGAGTTCATCACTGCTAAATGCACGGGTTTAATTCCTCACGA-CTTACACCAGCT 16711 ||||||||||||||||| || | ||||| || | || || ||| ||| | | || Sbjct 227 CGTGCCGAGTTCATCACCGCCCATTGCACCGGCCTGATGATTCCCGATCTTGC-CGGCCT 285 Query 16712 CACTGTTCCCGATTGGAACACGCTGCAGGAGCGTGTGAATCATTTTTTGAACGAAACGGC 16771 || || ||||| |||| | |||||||||||| | | ||||||| ||| || |||| Sbjct 286 GACCGTGCCCGACTGGACCGAGCTGCAGGAGCGCATCGACGATTTTTTAAACAAACCGGC 345 Query 16772 CGACTTCTTTCCATCAACGACATCGACGTCTTAAGCGACGTTATTCCGCTGGTTTACCAG 16831 |||||||||| ||||||||| || | ||| || | |||||||||||| | Sbjct 346 GGACTTCTTTCGGAGCGCGACATCGAAGTGATCCTCGATGTAGTGCCGCTGGTTTACTCG 405 Query 16832 GTAAGCGA 16839 |||| ||| Sbjct 406 GTAAACGA 413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125416641745542