Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq8977 273 1e-68 seq1734 248 4e-61 >seq8977 Length=2429 Score = 273 bits (302), Expect = 1e-68 Identities = 563/837 (67%), Gaps = 3/837 (0%) Strand=Plus/Minus Query 65913 ATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGC 65972 ||| |||| ||||| | | ||||||| ||| |||||||| || || || | ||| Sbjct 2110 ATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGC 2051 Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || | || || |||||||||||||| ||||| || || | || || ||| | | Sbjct 2050 CGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTG 1991 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTC 66092 | ||| | || ||||| || | || | || | | |||||||||| || | || Sbjct 1990 ATTGCCCAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTG 1931 Query 66093 GACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCA 66152 || ||||| ||||||| ||| || || | || || | || ||||| ||||| Sbjct 1930 GATCCTGAATACGCCGGCAAGCTGGGCGTCAACGTTGATGACCTGCTGGTTTCCCAGCCG 1871 Query 66153 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCC 66212 ||||| |||||||| |||||||| ||| ||| | || || || || | | Sbjct 1870 GACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGAC 1811 Query 66213 ATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATC 66272 | ||||| || ||||| ||||| |||||||| || ||| || ||||||| || || Sbjct 1810 GTGATCGTGGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATG 1751 Query 66273 GGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACC 66332 || ||| |||||| |||||||| |||||||||||||| ||||| |||| || | ||| Sbjct 1750 GGCGACATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACC 1691 Query 66333 GGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATC 66392 || | || | | ||||| || | | | || ||| | || ||||||| Sbjct 1690 GGTAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAGATC 1631 Query 66393 GGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTAC 66452 ||| || | | ||||| || ||||||||||||||||| || ||| |||||| Sbjct 1630 GGCGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCTAC 1574 Query 66453 GCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTC 66512 || ||||| ||| ||||| ||||| | | | | | | ||||||||| || |||| ||| Sbjct 1573 GCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTT 1514 Query 66513 GGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCT 66572 || | | || ||||| ||||| || |||||||| | || || || ||| |||||| Sbjct 1513 GGTAGCGAAACCCGCGTCAAGGTCGTGAAGAACAAAGTTGCCCCGCCATTCCGTCAGGCT 1454 Query 66573 GAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGGCC 66632 ||||| || |||||||| |||| || | || | | || | ||||| ||| | Sbjct 1453 GAGTTCCAGATTCTCTACGGCAAGGGTATCTACCTGAACGGCGAGATGATCGACCTGGGC 1394 Query 66633 GTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATC 66692 || | || || || ||||||| || ||||||| ||| | || || ||| Sbjct 1393 GTACTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACGGCAGCAAGATC 1334 Query 66693 GGCCAGGGCAAGCCCAAGACCGTGCAGTGGCTGAAGGACAACCCGGACGTCGCCGCC 66749 || ||||||||| |||| | | ||| ||| ||| |||||||| |||| ||| Sbjct 1333 GGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGATAACCCGGATATCGCTGCC 1277 >seq1734 Length=3873 Score = 248 bits (274), Expect = 4e-61 Identities = 534/796 (67%), Gaps = 7/796 (1%) Strand=Plus/Plus Query 65911 CCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGG 65970 ||||| |||||||||| | | |||||| ||| || || ||||| || || | | Sbjct 372 CCATTTCCACCGGCTCTCTGGGGCTGGACATCGCGCTGGGTATCGGCGGTCTGCCAAAAG 431 Query 65971 GCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACG 66030 |||| | || || |||||||| || || || ||||| || | ||| | ||| | Sbjct 432 GCCGTATCGTCGAAATCTACGGCCCGGAATCGTCAGGTAAAACCACGCTCACGCTCTCGG 491 Query 66031 CGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTC 66090 | ||| | |||||||| || | || | || | | |||| ||||| ||| ||| Sbjct 492 TCATCGCCGAAGCCCAGAAAAGTGGCGCCACCTGTGCGTTCGTCGATGCCGAGCATGCTC 551 Query 66091 TCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGC 66150 | || || |||||||| | || || || | || ||| | || ||||| ||||| Sbjct 552 TTGATCCGGAGTACGCTGGCAAACTGGGCGTCAACGTAGACGACCTGCTGGTTTCGCAGC 611 Query 66151 CAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTT 66210 | ||||| || |||||||| ||||| || ||| | | || ||| | ||| Sbjct 612 CTGACACGGGTGAGCAGGCGCTGGAAATTACCGACATGTTGGTACGGTCCAATGCGGTCG 671 Query 66211 CCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACA 66270 | ||||| | || ||||| |||||||| ||||| || ||| || ||||||| || | Sbjct 672 ACGTCATCATCGTCGACTCCGTGGCGGCGCTGGTACCCAAGGCTGAAATCGAAGGCGAAA 731 Query 66271 TCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGA 66330 | || ||| |||||| ||| |||| || || |||||||| ||||| |||||||| | | Sbjct 732 TGGGTGACATGCACGTGGGCTTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGCAAGATCA 791 Query 66331 CCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGA 66390 |||| | || | | ||||| || | | | || ||| | || ||||| Sbjct 792 CCGGTAACATCAAGAACGCCAACTGCCTGGTTATCTTCATCAACCAGATCCGTATGAAGA 851 Query 66391 TCGGCA--ACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTT 66448 ||||| | || | || ||||| || ||||||||||| || || || ||| || Sbjct 852 TCGGCGTGATGTTCGGTA--GCCCG---GAAACCACCACCGGCGGCAACGCACTGAAGTT 906 Query 66449 CTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGC 66508 ||| |||||||| || |||| ||||| | | || | | ||||||||||| |||| Sbjct 907 CTATGCCTCGGTTCGCCTGGACATCCGCCGCACCGGTGCAGTCAAGGAAGGCGACGAGGT 966 Query 66509 TGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCA 66568 || || | || ||||| ||| | |||||||||||| ||||||| ||| ||| || Sbjct 967 GGTGGGTAGTGAAACCCGCGTCAAGATCGTCAAGAACAAGGTGGCGCCACCGTTCCGTCA 1026 Query 66569 GGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACAT 66628 || || || || | |||||| |||| || | ||| | | |||| || |||| | Sbjct 1027 AGCGGAATTCCAGATTCTGTACGGCAAGGGTATCTACCGTAACGGTGAAATCATCGATCT 1086 Query 66629 GGCCGTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAA 66688 || ||| || | || || || |||| || || ||||||| || ||| | ||| || Sbjct 1087 GGGCGTGTCTCAGGGCCTGGTCGAGAAATCGGGCGCCTGGTACAGCTACCAAGGCAACAA 1146 Query 66689 CATCGGCCAGGGCAAG 66704 ||||| ||||||||| Sbjct 1147 GATCGGTCAGGGCAAG 1162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242379639767996