Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq14071 143 1e-29 seq29700 89.7 2e-13 >seq14071 Length=4236 Score = 143 bits (158), Expect = 1e-29 Identities = 166/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 36226 CAGGGCTGGAAACTGGGCGGGGCCATTAAAACCACCGAGCGCAAACTGGCTGAAGGGGTG 36285 || |||||| |||||||| ||||| ||||| |||||||||||||||| || || | Sbjct 1408 CAAGGCTGGCGCCTGGGCGGAGCCATCAAAACTGCCGAGCGCAAACTGGCCGAGGGCACG 1467 Query 36286 CTGGTGCATGGTGACCAGCCCCTGATGGCCTGGTGTGTCGGCAATGCCCGGGTGGAGCCT 36345 ||| | || || | |||||| ||||||||||||| ||| || ||| || ||||| Sbjct 1468 CTGCTACACGGGGGCCAGCCGATGATGGCCTGGTGCTGCGGTAACGCCAAAGTCGAGCCC 1527 Query 36346 AAAGGTAACGCCATTCTTATCACCAAACAGGCCAGTGGACGGGGAAAAATTGACCCGCTG 36405 || ||| | || || || || ||||||||||| || || || || ||||||||| Sbjct 1528 CGTGGCAACTCGATCCTCATTACTAAACAGGCCAGCGGCTCGGCCAAGATCGACCCGCTG 1587 Query 36406 ATGGCGCTGTTCAATGCGGTCTCCCTGATGTCCCTTAACCCGGA 36449 |||||||| ||||| || || | |||||| |||| || || || Sbjct 1588 ATGGCGCTATTCAACGCTGTGACGCTGATGGCCCTCAATCCAGA 1631 >seq29700 Length=774 Score = 89.7 bits (98), Expect = 2e-13 Identities = 134/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 36225 CCAGGGCTGGAAACTGGGCGGGGCCATTAAAACCACCGAGCGCAAACTGGCTGAAGGGGT 36284 |||||||||| ||| ||| || || |||||||| |||||||| | || | || | Sbjct 409 CCAGGGCTGGCGACTCAACGGCGCAATCAAAACCACAGAGCGCAAGGTTGCGGGCGGCGA 468 Query 36285 GCTGGTGCATGGTGACCAGCCCCTGATGGCCTGGTGTGTCGGCAATGCCCG---GGTGGA 36341 | | ||||| |||| | || || ||||||||||| |||||||| ||| | || | Sbjct 469 GTTTGTGCACGGTGGCACGCGGCTCATGGCCTGGTGCGTCGGCAACGCCAGAACTGTTGC 528 Query 36342 GCCTAAAGGTAACGCCATTCTTATCACCAAACAGGCCAGTGGACGGGGAAAAATTGACCC 36401 | | || |||||||| |||| |||||||| || || || ||| |||||||| Sbjct 529 GGTT---GGCAACGCCATAGCGATCAACAAACAGGTGAGCGGGTCGGCAAAGATTGACCC 585 Query 36402 GCTGATGGC 36410 ||| ||||| Sbjct 586 GCTCATGGC 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198676312958754