Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_011373.1 Length=46872 Score E Sequences producing significant alignments: (Bits) Value seq25168 89.7 2e-13 seq8600 87.8 5e-13 >seq25168 Length=1136 Score = 89.7 bits (98), Expect = 2e-13 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 14404 CCGGAGACCGGAACCTGGCTGCTCCAAAAGGGGGAGCGGGTAACGACCGCAGAGACGAGT 14463 |||||||| ||||||||||||||||||||||| ||||| || || || || || || || Sbjct 1134 CCGGAGACGGGAACCTGGCTGCTCCAAAAGGGTGAGCGAGTCACAACGGCCGAAACCAGC 1075 Query 14464 GCGAAACTCGACAAGACGCTTGATGACGTTCGCTCAAA-TCAGAGTGGCGGTGGTG 14518 || || | |||| ||||||||| | | ||| |||| |||| |||| || |||| Sbjct 1074 GCCAAGTTGGACAGGACGCTTGACCAGCTGCGCGCAAATTCAG-GTGGTGGAGGTG 1020 >seq8600 Length=1311 Score = 87.8 bits (96), Expect = 5e-13 Identities = 145/202 (72%), Gaps = 27/202 (13%) Strand=Plus/Minus Query 23884 GGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGGGT-AAGGCTCCCGGCACACCCGAAG 23942 ||| ||||| |||| |||||||||| | |||||| | |||| ||||| | | || || Sbjct 220 GGGTGGCGA-CTGT-CGCGGGTTGGTCAACCGGGAATCAAGGAAACCGGCGCGCACGGAG 163 Query 23943 GTGTCCCACGCACAGCCCGCCATAAAGCGA-------GGGCACaaaaaaaCGCC--CT-- 23991 | | ||||||||||| ||||||| | ||| ||||||||||||||||| || Sbjct 162 GCGCCCCACGCACAG-CCGCCATGACACGAGACAGCCGGGCACAAAAAAACGCCGACTGC 104 Query 23992 --------GCGGCGCTG-TGCGCCTTACCGATT-CGGGCGGCCAAGCCCGACCGCTGAAT 24041 ||||||||| |||||||| |||| |||| | |||| |||||| |||| || Sbjct 103 TTCGCTGAGCGGCGCTGATGCGCCTTGATGATTGCGGGTGACCAAACCCGACTGCTGGAT 44 Query 24042 TTGCAGCGGCAGGC--AGACTA 24061 | |||| || || |||||| Sbjct 43 TGACAGCAGCCCGCGAAGACTA 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149814140319604