Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq9203 349 9e-92 >seq9203 Length=13179 Score = 349 bits (386), Expect = 9e-92 Identities = 672/986 (68%), Gaps = 4/986 (0%) Strand=Plus/Minus Query 20133 TTTTCAAAATATATCGCGGGCGtttttttATTTCTGTATAAATTCTTCCGATGTACTCAC 20192 |||| | ||||| ||||| | || ||||| || || || || | ||||| || |||| Sbjct 11524 TTTTGAGGATATACCGCGGTCTTTGTTTTACCTCAGTGTATATGCGCCCGATATATTCAC 11465 Query 20193 CAAGGACACCAATGCCTATTAACTGTACTCCTCCAAGGAAAAGTATTGAAACTAACAATG 20252 | || |||||||| ||||| || || | || ||||| || || || || || | | | Sbjct 11464 CCAGCACACCAATACCTATCAATTGAATGCCACCAAGAAACAGAATGGAGACGAGTAGCG 11405 Query 20253 ATGGATATCCTGGAACACTATTTCCGAATAGAAGCTTGTCTAAAATCATCCATGCT-CCA 20311 ||||||| || || ||| ||| || | | || || || | | ||| | ||| ||| Sbjct 11404 ATGGATAACCAGGCACAGCATTACCCCAGATAACTTTATCAATTACCATGAA-GCTACCA 11346 Query 20312 TAAATGAAGGACGCGCTGGCAACAGCAAGACCGATGTAGGTCCACATTCGCAACGGGAAT 20371 || | || || | | || ||| | || | || ||||| | || | || | Sbjct 11345 TACAAAAATGAGCAGGTAGCCACAAACAACCCTAAATATGTCCATACTCTTAGAGGTACA 11286 Query 20372 GTTGAGAAACTTGTTATACCTTCAAGTGCCAGGTTCCATAGTTTCCAGCCATTAAATTTT 20431 | ||| || || ||||| ||||||| ||||| ||||||| ||||||||||||||| ||| Sbjct 11285 GATGAAAAGCTGGTTATTCCTTCAATCGCCAGATTCCATAATTTCCAGCCATTAAACTTT 11226 Query 20432 GAGTTGCCGGCAACACGCTCAGCCCTTGAATACTCAACAACATCAATTTTTCCACCTACC 20491 || | || ||| | || || || || || ||||| | ||||| ||||| | | || Sbjct 11225 GAATCCCCAGCAGACCTTTCTGCTCTAGAGTATTCAACCAGTTCAATATTTCCGCTTGCC 11166 Query 20492 CATGACAAAACGCCTTTCATGAATAGATTGCGCTCAGGAAGTAGTTTTATGTTTTCAACA 20551 |||||||| | |||||||| || | |||||||||||| || || || | ||||| || Sbjct 11165 CATGACAATATCCCTTTCATAAACAAATTGCGCTCAGGCAGCAGCTTAACATTTTCGACT 11106 Query 20552 ACTTCTCGCGACATCAAGCGGAAATCACCAACGTTTTCTTCGATTTTAGGGTTGCTAATT 20611 | |||| ||||| | ||||||||||| || || ||||| ||| | || | || ||| Sbjct 11105 GCCTCTCTTGACATTAGTCGGAAATCACCTACATTCTCTTCAATTCTCGGCGTACTGATT 11046 Query 20612 TTGTTGTGTAGCTTATAGAACCACTCAGCCGATTTGCGCTTTAGCCTTCCATCGGTAGAG 20671 || ||||| |||| |||||||| || | ||| | || | || || ||||| Sbjct 11045 TTATTGTGGCATCTATAAAACCACTCGGCTGTTTTCCTTTTCAACCAGTTTTCTTTAGAG 10986 Query 20672 CGGTCTGCTCTTTTAGCCAGAACCATATCAGCGCC-ATCTAGCCACCTATCAATGAGTTT 20730 || || | | || || | || | |||||| || | || |||| | ||| || | Sbjct 10985 CGATCAGTACGCTTGGCTAACACTACATCAGCCCCTAACT-GCCATTTTCTAATAAGCTC 10927 Query 20731 AGGAATAACATCGATAGGGTCTTGCAGATCAACGTCGATTGGGATAACAGCTTCACCAGT 20790 ||||| || || || || || || ||||| || || ||||| || ||||| || ||||| Sbjct 10926 TGGAATTACTTCAATGGGATCCTGAAGATCTACATCAATTGGAATTACAGCATCTCCAGT 10867 Query 20791 AGCATTATCAAGACCTGCGAATAGGGCTGGCTCTTTGCCAAAGTTTCTAGTGAACGATAG 20850 |||| || | ||| || ||||| ||||||||||| || || |||| ||||| ||| Sbjct 10866 CGCATATTCTATACCAGCAAATAGCGCTGGCTCTTTACCGAAATTTCGGGTGAAGCTTAG 10807 Query 20851 TGGTACCACTAATTTATCAGATACAGCAAGCGCATTGATGATTGATTCTGTCGAATCGCT 20910 | | ||||| ||| | ||| ||| || || | ||||| | |||| Sbjct 10806 CGCCATCACTAGACAATCTGCAGTCGCATATTTATTAATAATCAACTCTGTTGCATCGTG 10747 Query 20911 GCTTCCGTCATTGATGAAGACTATCTCAACTTCATGCTCCTTTAGGCCTTCAAACTCGCG 20970 || |||||||| ||||||| ||| || ||||||| ||| | | ||| || || Sbjct 10746 ACTACCGTCATTTATGAAGATTATTTCTACTTCATACTCGCTCAACTCTTTGTTTTCACG 10687 Query 20971 TACCGTTTTATAAAAAATAGGTATCGTGGCCTCTTCGTTAAAGACCGGAACGACTAAAGA 21030 || | |||||| || |||||||| | | ||||| || || || || || || || || Sbjct 10686 AACGGCTTTATAGAAGATAGGTATTGCATCTTCTTCATTGAAAACAGGTACAACCAATGA 10627 Query 21031 AATTTTCATTTCGTATCCCTAAAGACAATGAATTTTGAATAGATAAACCCTGCTACCAGG 21090 |||||||||| |||| |||| ||||| | |||||| || | || || | | || | Sbjct 10626 TATTTTCATTTTTTATCTTTAAAAACAATCAGTTTTGAGTAAAAGAATCCCACAATCAAG 10567 Query 21091 CTGAGTCCAGAGAATGCAATCAGGGT 21116 || | | |||| |||| ||||| || Sbjct 10566 CTAATTGCAGAAAATGTTATCAGCGT 10541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137479440634068