Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq6273 132 2e-26 seq6500 125 3e-24 >seq6273 Length=5978 Score = 132 bits (146), Expect = 2e-26 Identities = 313/463 (68%), Gaps = 20/463 (4%) Strand=Plus/Plus Query 24433 CGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTGG 24492 || ||| | |||||||||||||| ||||| ||||| ||||| | |||||||||| | Sbjct 2841 CGGAACCTGATCCTGAAGGCCCGGCAGCTTGGCTTCACCACTGAGTGCTGCATCATCCAG 2900 Query 24493 CTCGACCACGCGCTGTTCAACGCGAACAGCCGGTGCGGCATCATCGCCCAGAACC-GCGA 24551 |||||| ||| |||||| | || || ||||| | ||||| || | || | Sbjct 2901 CTCGACGCCGCTCTGTTCGAGTCGGCCA---AGTGCGCACTGATCGCTCACACCCTGAAC 2957 Query 24552 GACGGCCGAGGCGATCTTTCGGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCGAGGC 24611 ||| ||| || | | || ||||| || ||||||| ||| |||||||||||||| | | Sbjct 2958 GAC-GCCAAGCGGCTGTTCCGGGAGAAAGTGAAGTACGCGTACGACAACCTGCCGAAAGA 3016 Query 24612 GCTGCGCGACGCGATGCCGCTCG-CCAACTGCACGCAGTC--TGAGATGCTGTTCGGGCA 24668 | | |||| ||||| || | || |||| |||| | | |||| || | ||| | Sbjct 3017 GATCCGCGCCGCGA-ACCCCGCGAGCAAC--GACGCCGCCGGTGAGTTGGTATTCAG--- 3070 Query 24669 CAACAACAGCTCGATCCGCGTCGCGACGTCGGTGCGCGGCGGCACGATCCACCGCCTGCA 24728 ||| | |||| || |||| || ||| | || || ||||| | | |||||| Sbjct 3071 CAAGGGCGGCTCACTCTACGTCAGTACCTCGTTTCGGGGTGGCACTCTGCGATACCTGCA 3130 Query 24729 CGTCTCCGAGTTCGGGAAGATCTGTGCCGAGGCGCCGCTGAAGGCCAAGGAGATCGTGAC 24788 ||| |||||||||||||||||||| ||| || || | ||||| |||||| || || Sbjct 3131 CGTTTCCGAGTTCGGGAAGATCTGCGCCAAGTTCCCACACAAGGCGCGGGAGATTGTCAC 3190 Query 24789 CGGCTCGATCCCGGCCGTGCCGAAGTCGGGCATTCTGGT---CATCGAGTCGACGGCCGA 24845 || | | ||| ||| | | | | | | | || ||| ||||||||||| || Sbjct 3191 GGGTGCCTTTGAGGCTGTGGCCA---CTGACTGTTTCGTCACCATTGAGTCGACGGCAGA 3247 Query 24846 GGGCCGCGAGGGCGAGTTCTACGAGATCACGATGCGCGCCGAG 24888 ||||| | ||| | |||| |||| | || | |||| ||| Sbjct 3248 AGGCCGGGCCGGCTACTTCTTCGAGTACTCGCAGAGCGCAGAG 3290 >seq6500 Length=2387 Score = 125 bits (138), Expect = 3e-24 Identities = 303/447 (68%), Gaps = 24/447 (5%) Strand=Plus/Plus Query 24432 CCGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTG 24491 ||||||| ||||||||||||| || ||||||||||| || || | |||||||||| Sbjct 1948 CCGCAACATCATCCTGAAGGCTCGGCAGCTCGGCTTCACTACTGAGTGCTGCATCATCCA 2007 Query 24492 GCTCGACCACGCGCTGTTCAA---CGCGAACAGCCGGTGCGGCATCATCGCCCAGAACC- 24547 ||||||| ||| || ||| | ||||| ||||| | ||||| || | || Sbjct 2008 GCTCGACGCCGCTCTATTCGAGTCGGCGAA------GTGCGCGCTGATCGCTCACACCCT 2061 Query 24548 GCGAGACGGCCGAGGCGATCTTTCGGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCG 24607 | ||| ||| || | || ||||| ||||| || | ||||||||||||||||| Sbjct 2062 GAACGAC-GCCAAGCGCCTGTTCCGGGAGAAGGTCAAATATGCCTACGACAACCTGCCTA 2120 Query 24608 AGGCGCTGCGCGACG-CGATGCCGCTCGCCAAC--TGCACGCAGTCTGAGATGCTGTTCG 24664 | | | | |||| || | || | ||| | ||| ||| || | |||| | ||||| Sbjct 2121 AAGAGATACGCGCCGCCAATCCTGCT-TCTAACGATGC-TGCTG-GTGAGCTTGTGTTCA 2177 Query 24665 GGCACAACAACAGCTCGATCCGCGTCGCGACGTCGGTGCGCGGCGGCACGATCCACCG-- 24722 | ||| | | ||| || ||| | ||||| | || ||||| || || || | Sbjct 2178 G---CAAAGGCGGATCGCTCTACGTGTCCACGTCCTTCCGGGGCGGGAC--TCTACGGTA 2232 Query 24723 CCTGCACGTCTCCGAGTTCGGGAAGATCTGTGCCGAGGCGCCGCTGAAGGCCAAGGAGAT 24782 |||||||| |||||||||||||||||||| ||| || || | ||||||| ||||| Sbjct 2233 TCTGCACGTATCCGAGTTCGGGAAGATCTGCGCCAAGTTTCCCCACAAGGCCAGAGAGAT 2292 Query 24783 CGTGACCGGCTCGATCCCGGCCGTGCCGAAGTCGGGCATTCTGGTCATCGAGTCGACGGC 24842 ||| |||||| | || ||| || | | || || | || || |||||||| Sbjct 2293 CGTCACCGGCGCCTTCGAGGCTGTCGCCACCGATTGCTTTGTCACGATTGAATCGACGGC 2352 Query 24843 CGAGGGCCGCGAGGGCGAGTTCTACGA 24869 ||||| || | |||| | |||| ||| Sbjct 2353 GGAGGGGCGGGCGGGCTATTTCTTCGA 2379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200488126248468