Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_012743.2
Length=62715
Score E
Sequences producing significant alignments: (Bits) Value
seq6273 132 2e-26
seq6500 125 3e-24
>seq6273
Length=5978
Score = 132 bits (146), Expect = 2e-26
Identities = 313/463 (68%), Gaps = 20/463 (4%)
Strand=Plus/Plus
Query 24433 CGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTGG 24492
|| ||| | |||||||||||||| ||||| ||||| ||||| | |||||||||| |
Sbjct 2841 CGGAACCTGATCCTGAAGGCCCGGCAGCTTGGCTTCACCACTGAGTGCTGCATCATCCAG 2900
Query 24493 CTCGACCACGCGCTGTTCAACGCGAACAGCCGGTGCGGCATCATCGCCCAGAACC-GCGA 24551
|||||| ||| |||||| | || || ||||| | ||||| || | || |
Sbjct 2901 CTCGACGCCGCTCTGTTCGAGTCGGCCA---AGTGCGCACTGATCGCTCACACCCTGAAC 2957
Query 24552 GACGGCCGAGGCGATCTTTCGGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCGAGGC 24611
||| ||| || | | || ||||| || ||||||| ||| |||||||||||||| | |
Sbjct 2958 GAC-GCCAAGCGGCTGTTCCGGGAGAAAGTGAAGTACGCGTACGACAACCTGCCGAAAGA 3016
Query 24612 GCTGCGCGACGCGATGCCGCTCG-CCAACTGCACGCAGTC--TGAGATGCTGTTCGGGCA 24668
| | |||| ||||| || | || |||| |||| | | |||| || | ||| |
Sbjct 3017 GATCCGCGCCGCGA-ACCCCGCGAGCAAC--GACGCCGCCGGTGAGTTGGTATTCAG--- 3070
Query 24669 CAACAACAGCTCGATCCGCGTCGCGACGTCGGTGCGCGGCGGCACGATCCACCGCCTGCA 24728
||| | |||| || |||| || ||| | || || ||||| | | ||||||
Sbjct 3071 CAAGGGCGGCTCACTCTACGTCAGTACCTCGTTTCGGGGTGGCACTCTGCGATACCTGCA 3130
Query 24729 CGTCTCCGAGTTCGGGAAGATCTGTGCCGAGGCGCCGCTGAAGGCCAAGGAGATCGTGAC 24788
||| |||||||||||||||||||| ||| || || | ||||| |||||| || ||
Sbjct 3131 CGTTTCCGAGTTCGGGAAGATCTGCGCCAAGTTCCCACACAAGGCGCGGGAGATTGTCAC 3190
Query 24789 CGGCTCGATCCCGGCCGTGCCGAAGTCGGGCATTCTGGT---CATCGAGTCGACGGCCGA 24845
|| | | ||| ||| | | | | | | | || ||| ||||||||||| ||
Sbjct 3191 GGGTGCCTTTGAGGCTGTGGCCA---CTGACTGTTTCGTCACCATTGAGTCGACGGCAGA 3247
Query 24846 GGGCCGCGAGGGCGAGTTCTACGAGATCACGATGCGCGCCGAG 24888
||||| | ||| | |||| |||| | || | |||| |||
Sbjct 3248 AGGCCGGGCCGGCTACTTCTTCGAGTACTCGCAGAGCGCAGAG 3290
>seq6500
Length=2387
Score = 125 bits (138), Expect = 3e-24
Identities = 303/447 (68%), Gaps = 24/447 (5%)
Strand=Plus/Plus
Query 24432 CCGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTG 24491
||||||| ||||||||||||| || ||||||||||| || || | ||||||||||
Sbjct 1948 CCGCAACATCATCCTGAAGGCTCGGCAGCTCGGCTTCACTACTGAGTGCTGCATCATCCA 2007
Query 24492 GCTCGACCACGCGCTGTTCAA---CGCGAACAGCCGGTGCGGCATCATCGCCCAGAACC- 24547
||||||| ||| || ||| | ||||| ||||| | ||||| || | ||
Sbjct 2008 GCTCGACGCCGCTCTATTCGAGTCGGCGAA------GTGCGCGCTGATCGCTCACACCCT 2061
Query 24548 GCGAGACGGCCGAGGCGATCTTTCGGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCG 24607
| ||| ||| || | || ||||| ||||| || | |||||||||||||||||
Sbjct 2062 GAACGAC-GCCAAGCGCCTGTTCCGGGAGAAGGTCAAATATGCCTACGACAACCTGCCTA 2120
Query 24608 AGGCGCTGCGCGACG-CGATGCCGCTCGCCAAC--TGCACGCAGTCTGAGATGCTGTTCG 24664
| | | | |||| || | || | ||| | ||| ||| || | |||| | |||||
Sbjct 2121 AAGAGATACGCGCCGCCAATCCTGCT-TCTAACGATGC-TGCTG-GTGAGCTTGTGTTCA 2177
Query 24665 GGCACAACAACAGCTCGATCCGCGTCGCGACGTCGGTGCGCGGCGGCACGATCCACCG-- 24722
| ||| | | ||| || ||| | ||||| | || ||||| || || || |
Sbjct 2178 G---CAAAGGCGGATCGCTCTACGTGTCCACGTCCTTCCGGGGCGGGAC--TCTACGGTA 2232
Query 24723 CCTGCACGTCTCCGAGTTCGGGAAGATCTGTGCCGAGGCGCCGCTGAAGGCCAAGGAGAT 24782
|||||||| |||||||||||||||||||| ||| || || | ||||||| |||||
Sbjct 2233 TCTGCACGTATCCGAGTTCGGGAAGATCTGCGCCAAGTTTCCCCACAAGGCCAGAGAGAT 2292
Query 24783 CGTGACCGGCTCGATCCCGGCCGTGCCGAAGTCGGGCATTCTGGTCATCGAGTCGACGGC 24842
||| |||||| | || ||| || | | || || | || || ||||||||
Sbjct 2293 CGTCACCGGCGCCTTCGAGGCTGTCGCCACCGATTGCTTTGTCACGATTGAATCGACGGC 2352
Query 24843 CGAGGGCCGCGAGGGCGAGTTCTACGA 24869
||||| || | |||| | |||| |||
Sbjct 2353 GGAGGGGCGGGCGGGCTATTTCTTCGA 2379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 200488126248468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |