Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq8280 174 2e-38 seq26985 96.9 5e-15 >seq8280 Length=2548064 Score = 174 bits (192), Expect = 2e-38 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 ||||| | | | || || |||||||| || || ||||||| || || || ||||| || Sbjct 2052973 ATTAGCCTACTCGTCTGGAACAACTGTTCATCGTCCCATTCTGGATGCTCATGTTTAAGC 2053032 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 ||||| || || ||||||||||| | |||||| || ||||| |||||||| | ||| ||| Sbjct 2053033 ACATCACACACTCTGTTGTGTTCCCGCAGCCAAATTGTGGCATACATCATCAGACCAGGC 2053092 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | |||||| ||||| | |||||| ||||| ||||| | || || || | || | Sbjct 2053093 ACCAGACCAAAGACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGG 2053152 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || | ||| | ||||| || |||||||| ||||| |||||||||||||| |||| Sbjct 2053153 TAGATCATCTTGACCTGAGTATCTTTGACTGTGGGAGGATACATTTCACCACCAAT 2053208 Score = 149 bits (164), Expect = 9e-31 Identities = 218/303 (72%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| | || || ||||| || |||||||| || ||||| |||||||| | Sbjct 2051367 AACACTGAATGAGGTAAAAGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTGA 2051426 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | |||||||| || || || || ||||| || ||||||||| | Sbjct 2051427 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACTC 2051486 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGC-TCGA 9053 || || || || || |||| || ||||||||||| || || | | ||||| || | Sbjct 2051487 AGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTG-CTCCAGCTTCTA 2051545 Query 9054 TGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAG 9112 ||| |||| || |||||||| | || || || ||||| || | |||| ||| || Sbjct 2051546 CCATGGTCTCCCCAAAGATGGCGTCTGGTCGAGGCTTTTCTACCA-GAAGAGCAGGATAC 2051604 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCA 9172 || || | || || | ||| |||||||| ||||| ||||| ||||| || |||||||| Sbjct 2051605 AGCTCCATGGCATCAATGTCACCATAGAGCGCTTCTAACTCCGCAGCCATTTCCTTCTCT 2051664 Query 9173 CCT 9175 ||| Sbjct 2051665 CCT 2051667 Score = 113 bits (124), Expect = 7e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| | | ||| || |||||||| ||||||||| ||| ||| | || Sbjct 2054033 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 2054092 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || || ||||| || | || || || ||||||| || |||||||||||||| Sbjct 2054093 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 2054152 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | || ||||| ||||||| | | ||||||| || || Sbjct 2054153 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAG 2054209 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||||| || || | || || ||||||||| ||| || ||||| ||| ||| || Sbjct 2054636 TCACCTTTGACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 2054695 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATA 10490 |||||||| || || ||||| ||||||||||| || ||||| || Sbjct 2054696 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCGTA 2054739 >seq26985 Length=1365493 Score = 96.9 bits (106), Expect = 5e-15 Identities = 174/252 (69%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || | || ||||| | || ||||| || ||||| | ||||||||| Sbjct 923558 GTGGCCGTCTTGACAAGGTTGAAACCCATCTCACCGCCAAACGTGCTCGACTTCCAGTAC 923499 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || ||||| ||| | | ||| || || | |||||| |||||||| | || Sbjct 923498 TCTGGAGAACAGATAGGATTCCCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCT 923439 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || ||||||| ||| | || || | || | |||| | ||| Sbjct 923438 ATCATACTCTCCCCAAAGATGGAGTTTGGAGGGCACTTCTCAA-GAAGCAGCCCTGGGTA 923380 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || || | ||| ||||| || | |||| ||| || || ||||||||||| Sbjct 923379 GAACTCCAAGGCATCAATGTCTCCATACAGCTCCTCCAGCTCAGCTGCCATCTCCTTCTC 923320 Query 9172 ACCTACAAGCGC 9183 |||||||| || Sbjct 923319 TCCTACAAGGGC 923308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723450151774200