Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq8280 174 2e-38
seq26985 96.9 5e-15
>seq8280
Length=2548064
Score = 174 bits (192), Expect = 2e-38
Identities = 180/236 (76%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786
||||| | | | || || |||||||| || || ||||||| || || || ||||| ||
Sbjct 2052973 ATTAGCCTACTCGTCTGGAACAACTGTTCATCGTCCCATTCTGGATGCTCATGTTTAAGC 2053032
Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846
||||| || || ||||||||||| | |||||| || ||||| |||||||| | ||| |||
Sbjct 2053033 ACATCACACACTCTGTTGTGTTCCCGCAGCCAAATTGTGGCATACATCATCAGACCAGGC 2053092
Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906
|| | |||||| ||||| | |||||| ||||| ||||| | || || || | || |
Sbjct 2053093 ACCAGACCAAAGACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGG 2053152
Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
|| | ||| | ||||| || |||||||| ||||| |||||||||||||| ||||
Sbjct 2053153 TAGATCATCTTGACCTGAGTATCTTTGACTGTGGGAGGATACATTTCACCACCAAT 2053208
Score = 149 bits (164), Expect = 9e-31
Identities = 218/303 (72%), Gaps = 4/303 (1%)
Strand=Plus/Plus
Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934
||| | ||| | || || ||||| || |||||||| || ||||| |||||||| |
Sbjct 2051367 AACACTGAATGAGGTAAAAGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTGA 2051426
Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994
|| || || | ||| | |||||||| || || || || ||||| || ||||||||| |
Sbjct 2051427 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACTC 2051486
Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGC-TCGA 9053
|| || || || || |||| || ||||||||||| || || | | ||||| || |
Sbjct 2051487 AGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTG-CTCCAGCTTCTA 2051545
Query 9054 TGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAG 9112
||| |||| || |||||||| | || || || ||||| || | |||| ||| ||
Sbjct 2051546 CCATGGTCTCCCCAAAGATGGCGTCTGGTCGAGGCTTTTCTACCA-GAAGAGCAGGATAC 2051604
Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCA 9172
|| || | || || | ||| |||||||| ||||| ||||| ||||| || ||||||||
Sbjct 2051605 AGCTCCATGGCATCAATGTCACCATAGAGCGCTTCTAACTCCGCAGCCATTTCCTTCTCT 2051664
Query 9173 CCT 9175
|||
Sbjct 2051665 CCT 2051667
Score = 113 bits (124), Expect = 7e-20
Identities = 131/177 (74%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| | | ||| || |||||||| ||||||||| ||| ||| | ||
Sbjct 2054033 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 2054092
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
|||||| || || ||||| || | || || || ||||||| || ||||||||||||||
Sbjct 2054093 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 2054152
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
||||| || | || | | || ||||| ||||||| | | ||||||| || ||
Sbjct 2054153 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAG 2054209
Score = 84.2 bits (92), Expect = 3e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
|||||||| || || | || || ||||||||| ||| || ||||| ||| ||| ||
Sbjct 2054636 TCACCTTTGACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 2054695
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATA 10490
|||||||| || || ||||| ||||||||||| || ||||| ||
Sbjct 2054696 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCGTA 2054739
>seq26985
Length=1365493
Score = 96.9 bits (106), Expect = 5e-15
Identities = 174/252 (69%), Gaps = 2/252 (1%)
Strand=Plus/Minus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || || | || ||||| | || ||||| || ||||| | |||||||||
Sbjct 923558 GTGGCCGTCTTGACAAGGTTGAAACCCATCTCACCGCCAAACGTGCTCGACTTCCAGTAC 923499
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
| || || ||||| ||| | | ||| || || | |||||| |||||||| | ||
Sbjct 923498 TCTGGAGAACAGATAGGATTCCCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCT 923439
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111
|| || ||||| || ||||||| ||| | || || | || | |||| | |||
Sbjct 923438 ATCATACTCTCCCCAAAGATGGAGTTTGGAGGGCACTTCTCAA-GAAGCAGCCCTGGGTA 923380
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| || | || || | ||| ||||| || | |||| ||| || || |||||||||||
Sbjct 923379 GAACTCCAAGGCATCAATGTCTCCATACAGCTCCTCCAGCTCAGCTGCCATCTCCTTCTC 923320
Query 9172 ACCTACAAGCGC 9183
|||||||| ||
Sbjct 923319 TCCTACAAGGGC 923308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723450151774200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |