Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_013055.1
Length=39896
Score E
Sequences producing significant alignments: (Bits) Value
seq6053 159 9e-35
seq6890 114 3e-21
>seq6053
Length=4391
Score = 159 bits (176), Expect = 9e-35
Identities = 483/728 (66%), Gaps = 26/728 (4%)
Strand=Plus/Minus
Query 8441 TGATTATCGTCGGCGGACGGCCGTCGATGGGAAAGACCTCCCTCGCAATGAATATCGCAG 8500
|||| ||||| | || ||||| |||||||| || ||| | |||| ||||| | | |
Sbjct 1249 TGATCATCGTGGCGGGCCGGCCTTCGATGGGCAAAACCACGTTCGCCATGAACCTGGTGG 1190
Query 8501 AGCATGTCGCCAT-CGTGTCGAGATTGCCCGTCGGCGTCTTGTCGCTGGAAATGCCGACC 8559
| | | || | ||| ||| | ||| | | || || |||||||||||||| |
Sbjct 1189 AAAACGCCGTGTTGCGTACCGACAAGGCCGTGCTG-GTGTTTTCGCTGGAAATGCCAGGC 1131
Query 8560 GAACAGTTGACCATGCGCATGCTGGCGTCGACATCCCGTATCAGCCAAAACAGGCTGCGA 8619
||| | || |||||| |||||| | || |||||| ||| | || | ||||
Sbjct 1130 GAATCGCTGGTCATGCGTATGCTGTCCTCACTGGGTCGTATCGACCAGACCAAGGTGCGC 1071
Query 8620 ACCGGTCGCCTCGAG-GATGACGACTGGCCGCGCCTGACGCGTGGCGTCGAGCTGATGGC 8678
|||||| | ||| || ||||||||||| ||||| ||| | || | ||| |
Sbjct 1070 TCCGGTCAATT-GAGCGACGACGACTGGCCACGCCTCACGTCGGCGGTGAACCTGCTAAA 1012
Query 8679 CGACGCGCCCGTGCATATTC-TCGATAGCTCCGCG---ATCACCCCGTCGAA-ATTCAAG 8733
|||| ||| || | ||| ||||| | |||| |||| ||| ||| | || | |
Sbjct 1011 CGAC-CGCAAGT---TGTTCATCGATGACACCGCCGGCATCAGCCCATCGGAGATGCGCG 956
Query 8734 TCCGAGTTGCGGCGCTTGTATCGCGAATGCGGCCGGCTCGGGATGATTGTCGTTGACTAC 8793
|| || ||| || ||||| ||| | ||| ||||| | || || |||
Sbjct 955 CGCGCACC-CGACGCCTGGCACGCGAGCACGGTGAGATCGCCATGATCATGGTCGATTAC 897
Query 8794 CTGCAGCTGATGTCGGGTGACGG--CGGCGGATCTGAAATGCGGGCCACCGAGGTCGCCG 8851
|||||||||||| | | || | ||| | || | || | | |||| | |||
Sbjct 896 CTGCAGCTGATGCAGATTCCTGGTTCTTCGGGT--GACAACCGCACGAACGAGATTTCCG 839
Query 8852 AAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGT 8911
|||| || || | |||||| | || |||||| || | ||| |||| || || |
Sbjct 838 AAATCTCCCGGTCGCTCAAAGCCCTGGCCAAGGAATTCAATTGCCCGGTCATTGCCCTCT 779
Query 8912 CGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGC 8971
||||||| || || || ||| | ||||| ||||| || || || | ||||| |||
Sbjct 778 CGCAGCTCAACCGCTCTCTGGAGCAGCGCCCGAACAAACGCCCGGTGAACTCCGACTTGC 719
Query 8972 GCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGATGAGG 9031
| || || ||||| ||||||||||| |||||||| ||| | || | |||||||| ||||
Sbjct 718 GTGAATCCGGTGCAATCGAGCAGGACGCCGACGTCATCATGTTCGTGTACCGCGACGAGG 659
Query 9032 TCTATAACCCCG--ACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGCAGCG 9089
| ||| |||||| || | ||| | | || ||| ||||||||||| | || |||||
Sbjct 658 TGTATCACCCCGAAACCGAGCACAAAGGCGT--GGCGGAAATCATCATCGGCAAACAGCG 601
Query 9090 AAACGGGCCGATTGGCACCGTACGGCTCGCATTC--CAGAACGCAACAACCCGGTTCGAG 9147
|||||||| |||||| || || || || ||| | | | | | ||||| ||||||
Sbjct 600 TAACGGGCCAATTGGCTTTGTGCGCCTGGCGTTCATCGGCAAGTA--CACCCGTTTCGAG 543
Query 9148 AATTTCGC 9155
|| || ||
Sbjct 542 AACTTGGC 535
>seq6890
Length=6377
Score = 114 bits (126), Expect = 3e-21
Identities = 225/329 (68%), Gaps = 8/329 (2%)
Strand=Plus/Plus
Query 8786 TTGACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATC-TGAAATGCGGGCCACCGAG 8844
|||| ||||||||||| ||| || | || |||| || |||| | |||| ||||
Sbjct 4721 TTGATTACCTGCAGCTCATG-CG-----CTGC-GCGGGTCAGGAAAACAGAGCCAACGAG 4773
Query 8845 GTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATC 8904
|| || ||| || || || || ||| |||| |||||| | || || | ||
Sbjct 4774 ATCAGCGCAATCTCTCGGGCCCTTAAAGCCCTTGCCAAGGAAATGAACTGCCCAGTGGTC 4833
Query 8905 GCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCC 8964
||||| |||||||| || ||| || ||| | || || |||||||| || ||| ||
Sbjct 4834 GCGCTATCGCAGCTCAACCGATCCCTAGAGCAACGTCCGAACAAGCGCCCGATCAACTCA 4893
Query 8965 GATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGC 9024
|| | || || || || || ||||| ||||| || ||||| ||| | || | ||||||
Sbjct 4894 GACTTACGGGAATCCGGAGCAATCGAACAGGACGCAGACGTCATCATGTTCGTTTACCGC 4953
Query 9025 GATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAG 9084
|| ||||| ||| |||| | | || | | || | ||||| |||||||| | |||
Sbjct 4954 GACGAGGTGTATCACCCGCAGACCGAATACAAAGGCATTGCCGAGATCATCATCGGCAAG 5013
Query 9085 CAGCGAAACGGGCCGATTGGCACCGTACG 9113
|| ||||| || | ||||||||| ||
Sbjct 5014 GCACGCAACGGCCCTACTGGCACCGTTCG 5042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127499081967348
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |