Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq6053 159 9e-35 seq6890 114 3e-21 >seq6053 Length=4391 Score = 159 bits (176), Expect = 9e-35 Identities = 483/728 (66%), Gaps = 26/728 (4%) Strand=Plus/Minus Query 8441 TGATTATCGTCGGCGGACGGCCGTCGATGGGAAAGACCTCCCTCGCAATGAATATCGCAG 8500 |||| ||||| | || ||||| |||||||| || ||| | |||| ||||| | | | Sbjct 1249 TGATCATCGTGGCGGGCCGGCCTTCGATGGGCAAAACCACGTTCGCCATGAACCTGGTGG 1190 Query 8501 AGCATGTCGCCAT-CGTGTCGAGATTGCCCGTCGGCGTCTTGTCGCTGGAAATGCCGACC 8559 | | | || | ||| ||| | ||| | | || || |||||||||||||| | Sbjct 1189 AAAACGCCGTGTTGCGTACCGACAAGGCCGTGCTG-GTGTTTTCGCTGGAAATGCCAGGC 1131 Query 8560 GAACAGTTGACCATGCGCATGCTGGCGTCGACATCCCGTATCAGCCAAAACAGGCTGCGA 8619 ||| | || |||||| |||||| | || |||||| ||| | || | |||| Sbjct 1130 GAATCGCTGGTCATGCGTATGCTGTCCTCACTGGGTCGTATCGACCAGACCAAGGTGCGC 1071 Query 8620 ACCGGTCGCCTCGAG-GATGACGACTGGCCGCGCCTGACGCGTGGCGTCGAGCTGATGGC 8678 |||||| | ||| || ||||||||||| ||||| ||| | || | ||| | Sbjct 1070 TCCGGTCAATT-GAGCGACGACGACTGGCCACGCCTCACGTCGGCGGTGAACCTGCTAAA 1012 Query 8679 CGACGCGCCCGTGCATATTC-TCGATAGCTCCGCG---ATCACCCCGTCGAA-ATTCAAG 8733 |||| ||| || | ||| ||||| | |||| |||| ||| ||| | || | | Sbjct 1011 CGAC-CGCAAGT---TGTTCATCGATGACACCGCCGGCATCAGCCCATCGGAGATGCGCG 956 Query 8734 TCCGAGTTGCGGCGCTTGTATCGCGAATGCGGCCGGCTCGGGATGATTGTCGTTGACTAC 8793 || || ||| || ||||| ||| | ||| ||||| | || || ||| Sbjct 955 CGCGCACC-CGACGCCTGGCACGCGAGCACGGTGAGATCGCCATGATCATGGTCGATTAC 897 Query 8794 CTGCAGCTGATGTCGGGTGACGG--CGGCGGATCTGAAATGCGGGCCACCGAGGTCGCCG 8851 |||||||||||| | | || | ||| | || | || | | |||| | ||| Sbjct 896 CTGCAGCTGATGCAGATTCCTGGTTCTTCGGGT--GACAACCGCACGAACGAGATTTCCG 839 Query 8852 AAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGT 8911 |||| || || | |||||| | || |||||| || | ||| |||| || || | Sbjct 838 AAATCTCCCGGTCGCTCAAAGCCCTGGCCAAGGAATTCAATTGCCCGGTCATTGCCCTCT 779 Query 8912 CGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGC 8971 ||||||| || || || ||| | ||||| ||||| || || || | ||||| ||| Sbjct 778 CGCAGCTCAACCGCTCTCTGGAGCAGCGCCCGAACAAACGCCCGGTGAACTCCGACTTGC 719 Query 8972 GCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGATGAGG 9031 | || || ||||| ||||||||||| |||||||| ||| | || | |||||||| |||| Sbjct 718 GTGAATCCGGTGCAATCGAGCAGGACGCCGACGTCATCATGTTCGTGTACCGCGACGAGG 659 Query 9032 TCTATAACCCCG--ACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGCAGCG 9089 | ||| |||||| || | ||| | | || ||| ||||||||||| | || ||||| Sbjct 658 TGTATCACCCCGAAACCGAGCACAAAGGCGT--GGCGGAAATCATCATCGGCAAACAGCG 601 Query 9090 AAACGGGCCGATTGGCACCGTACGGCTCGCATTC--CAGAACGCAACAACCCGGTTCGAG 9147 |||||||| |||||| || || || || ||| | | | | | ||||| |||||| Sbjct 600 TAACGGGCCAATTGGCTTTGTGCGCCTGGCGTTCATCGGCAAGTA--CACCCGTTTCGAG 543 Query 9148 AATTTCGC 9155 || || || Sbjct 542 AACTTGGC 535 >seq6890 Length=6377 Score = 114 bits (126), Expect = 3e-21 Identities = 225/329 (68%), Gaps = 8/329 (2%) Strand=Plus/Plus Query 8786 TTGACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATC-TGAAATGCGGGCCACCGAG 8844 |||| ||||||||||| ||| || | || |||| || |||| | |||| |||| Sbjct 4721 TTGATTACCTGCAGCTCATG-CG-----CTGC-GCGGGTCAGGAAAACAGAGCCAACGAG 4773 Query 8845 GTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATC 8904 || || ||| || || || || ||| |||| |||||| | || || | || Sbjct 4774 ATCAGCGCAATCTCTCGGGCCCTTAAAGCCCTTGCCAAGGAAATGAACTGCCCAGTGGTC 4833 Query 8905 GCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCC 8964 ||||| |||||||| || ||| || ||| | || || |||||||| || ||| || Sbjct 4834 GCGCTATCGCAGCTCAACCGATCCCTAGAGCAACGTCCGAACAAGCGCCCGATCAACTCA 4893 Query 8965 GATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGC 9024 || | || || || || || ||||| ||||| || ||||| ||| | || | |||||| Sbjct 4894 GACTTACGGGAATCCGGAGCAATCGAACAGGACGCAGACGTCATCATGTTCGTTTACCGC 4953 Query 9025 GATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAG 9084 || ||||| ||| |||| | | || | | || | ||||| |||||||| | ||| Sbjct 4954 GACGAGGTGTATCACCCGCAGACCGAATACAAAGGCATTGCCGAGATCATCATCGGCAAG 5013 Query 9085 CAGCGAAACGGGCCGATTGGCACCGTACG 9113 || ||||| || | ||||||||| || Sbjct 5014 GCACGCAACGGCCCTACTGGCACCGTTCG 5042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127499081967348