Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq18312 114 2e-20 seq20687 84.2 3e-11 >seq18312 Length=6437 Score = 114 bits (126), Expect = 2e-20 Identities = 259/379 (68%), Gaps = 14/379 (4%) Strand=Plus/Plus Query 12695 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 12754 || || ||| || |||||||| ||||| || || || ||| |||| ||| |||||| Sbjct 1136 GACCTGACGGTCGAAGCGACCGGGGCGCAGCAGCGCAGGGTCGAGGACGTCAGGGCGGTT 1195 Query 12755 CGTCGCCGCGATGACAACGATGCC--CGTCTCGTTATCGAAGCCATCCATCTCAGTCAAG 12812 ||||| |||||||| | |||||| ||| || | |||||||| |||||||| || Sbjct 1196 GGTCGCGGCGATGACGATGATGCCATCGT-TCATC-TCGAAGCCGTCCATCTCTACCAGC 1253 Query 12813 AGTTGATTGATGGTTTGTTCACGTTCATCATT---CGCGGGCATACCACCCGCACTGCGT 12869 | || |||| ||| || ||||| || || | | || ||| ||| |||| || Sbjct 1254 AACTGGTTGAGGGTCTGCTCACGCTCGTCGTGGCCCCCGCCCATGCCA---GCACCACGG 1310 Query 12870 TGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATT-TTCACGGGC 12928 || ||||||||||| || ||||| ||||| | ||| || || | ||| || | Sbjct 1311 TGACGGCCGACGGCGTCGATCTCGTCGATGAAGATGATGCAAGGGGCGTGCTTCTTGGCC 1370 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 || | || || || || || | ||||||||||||| || ||||| || || || | Sbjct 1371 TGCT-CGAACATGTCGCGTACACGGCTGGCACCGACACCGACGAACATTTCAACGAAGTC 1429 Query 12989 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 | ||||| || | || ||| || || |||| || || || || || ||| || | Sbjct 1430 CGACCCGGAA-ATGGTGAAGAACGGCACCTTGGCCTCGCCTGCAATAGCCTTGGCCAGCA 1488 Query 13048 GGGTCTTCCCCGTCCCTGG 13066 ||||||| || || || || Sbjct 1489 GGGTCTTACCGGTACCGGG 1507 >seq20687 Length=1308170 Score = 84.2 bits (92), Expect = 3e-11 Identities = 137/193 (71%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 116096 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 116155 |||| || |||||| | || ||||||||||| | ||| |||||||| |||| || | Sbjct 994471 CTGGAGAGCCCTCATAGGTTTCATATGGGCCATACTCCTTGGCCAATTCACAGCTGGCTT 994412 Query 116156 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 116215 | | |||| | | ||| || || ||||| || | ||||| | || |||||| ||| Sbjct 994411 CCAAGGCTCCATAATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTC--CGG 994354 Query 116216 A--ATCAAACGCGAGACGGCA-CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGC 116272 | ||||| | | || || || |||||| |||| || |||||||| || || | | Sbjct 994353 ACTCTCAAAAG-GGTACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTC 994295 Query 116273 CAATTGGGCGATG 116285 |||| |||||||| Sbjct 994294 CAATGGGGCGATG 994282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613271666917080