Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq10790 96.9 4e-15 seq5365 93.3 5e-14 >seq10790 Length=2053270 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || |||| || | ||||| |||| ||| ||| || ||||| ||||| || || Sbjct 1303362 GCCACCCCTTAGACAGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGA 1303303 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 | ||||| |||| || ||||| ||||| || || | | | ||||||||| | || Sbjct 1303302 AATAGTGCAGCCGTCTTCCAGCTGTTTGCCTGCAAACGTGAGCCTCTGCTGGTCAGGGGG 1303243 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || || || ||| |||||| ||| | || | ||||| || | ||||| Sbjct 1303242 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCAC 1303183 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||||||||| || || | ||||| ||||| Sbjct 1303182 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 1303135 >seq5365 Length=1496801 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | ||| | ||||| |||| || ||| | |||||||| ||||| | Sbjct 701804 TGCCACCTCGCAGACGAAGCACCAAGTGCAGAGTGGACTCTTCCTGGATATTATAGTCTG 701863 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || | ||||| ||||| | ||| |||| ||||||||||| | | Sbjct 701864 ACAGAGTGCGGCCATCCTTCAGCTGTTTGCCCGTGAAAATCAGACGCTGCTGGTCAGGTG 701923 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | || ||||||||| ||| || |||| || | ||||| || | || | Sbjct 701924 GACTGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGA 701983 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| |||||| ||| || || |||||||| ||||| Sbjct 701984 TCTCTAGAGTGATGGTCTTGCCCATCAAGGTCTTCACAAAGATCTGCAT 702032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565021397912760