Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq18312 91.5 2e-13 seq15277 82.4 9e-11 >seq18312 Length=6437 Score = 91.5 bits (100), Expect = 2e-13 Identities = 296/449 (66%), Gaps = 18/449 (4%) Strand=Plus/Plus Query 9147 ATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCT 9206 |||| ||| || ||||||| || || | || || || ||| || |||||||| Sbjct 1098 ATCTGCTCACGACCCCGAATGTCCGGCAGGCCAACGACGACCTGACGGTCGAAGCGACCG 1157 Query 9207 GGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATA 9266 || || || ||||| || |||| ||| ||| || |||||||||||||| | || Sbjct 1158 GGGCGCAGCAGCGCAGGGTCGAGGACGTCAGGGCGGTTGGTCGCGGCGATGACGATGATG 1217 Query 9267 CC-TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCG 9325 || | |||| | || || || ||||||||| || | ||||| | || || || || Sbjct 1218 CCATCGTTCA-TCTCGAAGCCGTCCATCTCTACCAGCAACTGGTTGAGGGTCTGCTCACG 1276 Query 9326 TTCATCAT-TCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTC 9382 || || | | | || ||| ||||||| || || || ||||| || ||||| Sbjct 1277 CTCGTCGTGGCCCCCGC---CCATGCCAGCACCACGGTGACGGCCGACGGCGTCGATCTC 1333 Query 9383 ATCAATGAAGACAATACATGG---TTGATT-TTCGCGGGCGATTTCAAAGAGATCGCGAA 9438 || ||||||| || || || || || || || || || || | ||||| | Sbjct 1334 GTCGATGAAGATGATGCAAGGGGCGTGCTTCTTGGCCTGC----TCGAACATGTCGCGTA 1389 Query 9439 CCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATG 9497 | | |||| || ||||| || ||||| || || |||| | ||||| || | || | Sbjct 1390 CACGGCTGGCACCGACACCGACGAACATTTCAACGAAGTCCGACCCGGAA-ATGGTGAAG 1448 Query 9498 AAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557 || || || || | || || ||||| || ||| || || |||||||| ||||| ||| Sbjct 1449 AACGGCACCTTGGCCTCGCCTGCAATAGCCTTGGCCAGCAGGGTCTTACCGGTACCGGGC 1508 Query 9558 TTACCCGCGAGGAGGGCACCCCGTGGAAT 9586 ||| | | || |||| || ||||| Sbjct 1509 GGGCCCACCATCAGCACACCGCGCGGAAT 1537 >seq15277 Length=4737824 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || |||| ||||||||||||||| |||||||| || || ||| || ||||| Sbjct 3365752 ATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCAT 3365811 Query 117045 AAAGTCAAATGGATT 117059 ||||||||||||||| Sbjct 3365812 AAAGTCAAATGGATT 3365826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589754298996120