Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_015250.1 Length=159801 Score E Sequences producing significant alignments: (Bits) Value seq17834 96.9 4e-15 seq8615 89.7 5e-13 seq13800 86.0 6e-12 >seq17834 Length=378 Score = 96.9 bits (106), Expect = 4e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 69740 TGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCT-GCC 69798 |||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||| || Sbjct 76 TGGTGGGCCCAGTAGGACTCGAACCTACGACCAAGGGATTATGAGTCCCCTGCTCTAACC 135 Query 69799 AATTGAGCTATAGGCCCT 69816 || ||||||||||||||| Sbjct 136 AACTGAGCTATAGGCCCT 153 >seq8615 Length=1762 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 69737 ATCTGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCT- 69795 || ||||||||||| | |||| |||| | ||||||||||||||||||||||||||| Sbjct 450 ATATGGTGGGCCCACCGTGACTTGAACACGGGACCAACGGATTATGAGTCCGCTGCTCTA 391 Query 69796 GCCAATTGAGCTATAGGCCCT 69816 |||| ||||||||||||||| Sbjct 390 ACCAACTGAGCTATAGGCCCT 370 >seq13800 Length=12474 Score = 86.0 bits (94), Expect = 6e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 69736 AATCTGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCT 69795 ||| ||||||||||| ||||||||||| ||||| ||||||||||||| ||||||| Sbjct 8371 AATATGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCT 8312 Query 69796 -GCCAATTGAGCTATAGGCCCT 69816 |||| ||||||||||||||| Sbjct 8311 AACCAACTGAGCTATAGGCCCT 8290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511038930416280