Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq6463 98.7 3e-16 seq6053 96.9 1e-15 >seq6463 Length=1127 Score = 98.7 bits (108), Expect = 3e-16 Identities = 100/130 (77%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 29845 TGATTACTGCGTTAACGAGCTGTGCTTCATAGCCCAAAGTGCC---GTTTACAAGGTGTG 29901 |||||||||||||||||||||| || ||||||| ||| | ||| ||| || | | || Sbjct 616 TGATTACTGCGTTAACGAGCTGCGCCTCATAGCTCAACGCGCCACCGTTGACGATGAATG 675 Query 29902 TTTTTTGAGCCACGGCGAAGGGATTCATTCCCCACTGCGCGGCCTGTAGCGCAACCGCCA 29961 | ||||| || ||||||||||| ||||| ||||||| || || ||| | ||||||| Sbjct 676 TCTTTTGTGCAACGGCGAAGGGGTTCATCTGCCACTGCATCGCTTGAAGCACCACCGCCA 735 Query 29962 GGCAATCAGC 29971 ||| || || Sbjct 736 TGCAGTCGGC 745 >seq6053 Length=4391 Score = 96.9 bits (106), Expect = 1e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656 ||||| || || || |||||||| || || | || ||| | ||||| | ||||| Sbjct 815 CTGGCCAAGGAATTCAATTGCCCGGTCATTGCCCTCTCGCAGCTCAACCGCTCTCTGGAG 756 Query 37657 CAGCGTGCAAACAAGCGACCGTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 ||||| | ||||| || ||| || ||||||| ||||| || || | |||||||||| Sbjct 755 CAGCGCCCGAACAAACGCCCGGTGAACTCCGACTTGCGTGAATCCGGTGCAATCGAGCAG 696 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAGATG 37776 || || || || || | | || || ||||||||| ||| |||| | || ||| Sbjct 695 GACGCCGACGTCATCATGTTCGTGTACCGCGACGAGGTGTATCACCCCGAAACCGAGCAC 636 Query 37777 AAAGGCGTCACTGAAATCATC 37797 |||||||| | ||||||||| Sbjct 635 AAAGGCGTGGCGGAAATCATC 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151116065312346