Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq11056 136 9e-27 seq2328 132 1e-25 seq4839 129 1e-24 seq10790 104 5e-17 seq451 104 5e-17 seq24420 98.7 2e-15 seq5365 98.7 2e-15 seq23604 95.1 3e-14 >seq11056 Length=1110308 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||| | |||||||||||||| |||||||| ||||| || | ||||| | Sbjct 356867 AGTCTCAACACAGGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGT 356808 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | ||||| || || ||||| |||| ||| ||||| |||||||| ||||| Sbjct 356807 CCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 356748 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || | | || || || || || ||||| || || || || || Sbjct 356747 TTGTCCTGGATCTTGGCCATTACATTTTCTATTGTATCCGAGGGTTTGACCTCGAGAGTG 356688 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || |||| || || ||||| | ||||| Sbjct 356687 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 356650 >seq2328 Length=1860655 Score = 132 bits (146), Expect = 1e-25 Identities = 161/218 (74%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||| | ||||| || | | ||| | Sbjct 1240019 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGACAAAGTACGT 1240078 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| |||| ||| ||||| |||||||| |||| Sbjct 1240079 CCATCTTCCAGGTGCTTGCCAGCAAAGATCAGTC-TTGCTGGTCAGGAGGAATTACTTCC 1240137 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || ||| ||||| || | || || || ||| || || || || Sbjct 1240138 TTGTCCTGGATCTTGGCCTTTACGTTTTCTGTTGTATCTGAGGGTTCGACCTCGAGAGTG 1240197 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || |||| || || ||||| | ||||| Sbjct 1240198 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 1240235 >seq4839 Length=4080137 Score = 129 bits (142), Expect = 1e-24 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || ||||| || | || || | ||||||||| Sbjct 528714 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 528655 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || |||||||| || ||||| ||||| || || Sbjct 528654 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCCTGG 528595 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||||||||| |||||||| ||| ||||| || || || | ||| Sbjct 528594 ATCTTCCCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGAGTGATGGTC 528538 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || ||||| || || ||||| | |||||| Sbjct 528537 TTACCAGTCAAGGTCTTCACGAAGATCTGCATT 528505 >seq10790 Length=2053270 Score = 104 bits (114), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | || ||| | || ||||| Sbjct 1303343 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCC 1303284 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || ||||| || | || | || ||||| || || ||||||||||| || || Sbjct 1303283 AGCTGTTTGCCTGCAAACGTGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGG 1303224 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||| |||||||| ||| ||||| || ||||| | ||| Sbjct 1303223 ATCTTGGCCTTCACATTCTTGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 1303167 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || |||| | ||||| Sbjct 1303166 TTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 1303135 >seq451 Length=5792110 Score = 104 bits (114), Expect = 5e-17 Identities = 132/180 (73%), Gaps = 5/180 (3%) Strand=Plus/Plus Query 194923 AGTCTCAAAAC-AAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||||| | ||| |||||||||||||| |||||||| ||||| || | ||| | Sbjct 4044001 AGTCTCAACATTAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACA 4044056 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | ||||| || || ||||| |||| ||| ||||| |||||||| ||||| Sbjct 4044057 TCCATCTTCCACTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 4044116 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || ||| || || || | || || || ||| ||||||| || Sbjct 4044117 CTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAGCTTCAAGAGT 4044176 >seq24420 Length=3268280 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/212 (71%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 2497464 ACCAGGTGTAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2497523 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| || ||||| |||| || | || ||||| || ||| |||||||||| || || Sbjct 2497524 ATCTGTTTGCCTGCAAAGAGGAGCCTCTGCTGGTCGGGGGGA-TGCCTTCTTTATCCTGG 2497582 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||| ||||| ||| || || || ||||| | ||| Sbjct 2497583 ATCTTGGCCTTCACATTCTCA---GTGTC---ACTGGGCTCTACCTCCAGGGTGATGGTC 2497636 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||| || || ||||| | ||||| Sbjct 2497637 TTGCAGGTCAGGGTCTTCACGAAGATCTGCAT 2497668 >seq5365 Length=1496801 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||||| || ||||| || || | ||||| | ||||| | ||||| Sbjct 701829 GTGCAGAGTGGACTCTTCCTGGATATTATAGTCTGACAGAGTGCGGCCATCCTTCAGCTG 701888 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || | ||| || || || || ||||| || ||| |||| || |||||||| ||||| Sbjct 701889 TTTGCCCGTGAAAATCAGACGCTGCTGGTCAGGTGGACTGCCCTCCTTGTCTTGGATTTT 701948 Query 195057 TTGCTTGACGTTCTCAATGGTGTC 195080 ||||| |||||| ||||||| Sbjct 701949 AGCTTTGACATTCTCAGTGGTGTC 701972 >seq23604 Length=314588 Score = 95.1 bits (104), Expect = 3e-14 Identities = 111/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||||| || || ||||||| | | |||| |||||||| Sbjct 184074 ACCAGGTGCAGGGTCAACTCTTTCTGGATGCTGTAATCAGAAGGAGTGTGGCCATCTTCC 184133 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || ||||| ||||| || | || || || || || ||||||||||| || | Sbjct 184134 AGCTGTTTGCCTGCAAAGATGAGCCTCTGATGATCGGG-GGCATGCCTTCTTTATCCTCG 184192 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||| ||||||||||||||||| Sbjct 184193 ATCTTGGCCTTCACGTTCTCAATGGTGTC 184221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109045007548871