Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq11056 136 9e-27
seq2328 132 1e-25
seq4839 129 1e-24
seq10790 104 5e-17
seq451 104 5e-17
seq24420 98.7 2e-15
seq5365 98.7 2e-15
seq23604 95.1 3e-14
>seq11056
Length=1110308
Score = 136 bits (150), Expect = 9e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| ||| | |||||||||||||| |||||||| ||||| || | ||||| |
Sbjct 356867 AGTCTCAACACAGGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGT 356808
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| | ||||| || || ||||| |||| ||| ||||| |||||||| |||||
Sbjct 356807 CCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 356748
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
||||| || || || | | || || || || || ||||| || || || || ||
Sbjct 356747 TTGTCCTGGATCTTGGCCATTACATTTTCTATTGTATCCGAGGGTTTGACCTCGAGAGTG 356688
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || |||| || || ||||| | |||||
Sbjct 356687 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 356650
>seq2328
Length=1860655
Score = 132 bits (146), Expect = 1e-25
Identities = 161/218 (74%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| ||||| |||||||||||||| |||||| | ||||| || | | ||| |
Sbjct 1240019 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGACAAAGTACGT 1240078
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| || ||||| || || ||||| |||| ||| ||||| |||||||| ||||
Sbjct 1240079 CCATCTTCCAGGTGCTTGCCAGCAAAGATCAGTC-TTGCTGGTCAGGAGGAATTACTTCC 1240137
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
||||| || || || ||| ||||| || | || || || ||| || || || ||
Sbjct 1240138 TTGTCCTGGATCTTGGCCTTTACGTTTTCTGTTGTATCTGAGGGTTCGACCTCGAGAGTG 1240197
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || |||| || || ||||| | |||||
Sbjct 1240198 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 1240235
>seq4839
Length=4080137
Score = 129 bits (142), Expect = 1e-24
Identities = 157/213 (74%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| || || ||||| || | || || | |||||||||
Sbjct 528714 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 528655
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || || || ||||| || | || |||||||| || ||||| ||||| || ||
Sbjct 528654 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCCTGG 528595
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || |||||||||||| |||||||| ||| ||||| || || || | |||
Sbjct 528594 ATCTTCCCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGAGTGATGGTC 528538
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || ||||| || || ||||| | ||||||
Sbjct 528537 TTACCAGTCAAGGTCTTCACGAAGATCTGCATT 528505
>seq10790
Length=2053270
Score = 104 bits (114), Expect = 5e-17
Identities = 151/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| || || |||||||| | || ||| | || |||||
Sbjct 1303343 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCC 1303284
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || ||||| || | || | || ||||| || || ||||||||||| || ||
Sbjct 1303283 AGCTGTTTGCCTGCAAACGTGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGG 1303224
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||| |||||||| ||| ||||| || ||||| | |||
Sbjct 1303223 ATCTTGGCCTTCACATTCTTGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 1303167
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || |||| | |||||
Sbjct 1303166 TTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 1303135
>seq451
Length=5792110
Score = 104 bits (114), Expect = 5e-17
Identities = 132/180 (73%), Gaps = 5/180 (3%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAAC-AAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
|||||||| | ||| |||||||||||||| |||||||| ||||| || | ||| |
Sbjct 4044001 AGTCTCAACATTAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACA 4044056
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|||||||| | ||||| || || ||||| |||| ||| ||||| |||||||| |||||
Sbjct 4044057 TCCATCTTCCACTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 4044116
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
|| || || || || ||| || || || | || || || ||| ||||||| ||
Sbjct 4044117 CTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCTGAGGGTTCAGCTTCAAGAGT 4044176
>seq24420
Length=3268280
Score = 98.7 bits (108), Expect = 2e-15
Identities = 151/212 (71%), Gaps = 10/212 (5%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| || || |||||||| | |||||| | ||||||||
Sbjct 2497464 ACCAGGTGTAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2497523
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| ||| || ||||| |||| || | || ||||| || ||| |||||||||| || ||
Sbjct 2497524 ATCTGTTTGCCTGCAAAGAGGAGCCTCTGCTGGTCGGGGGGA-TGCCTTCTTTATCCTGG 2497582
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||||| ||||| ||| || || || ||||| | |||
Sbjct 2497583 ATCTTGGCCTTCACATTCTCA---GTGTC---ACTGGGCTCTACCTCCAGGGTGATGGTC 2497636
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | |||| || || ||||| | |||||
Sbjct 2497637 TTGCAGGTCAGGGTCTTCACGAAGATCTGCAT 2497668
>seq5365
Length=1496801
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| ||||||||||||| || ||||| || || | ||||| | ||||| | |||||
Sbjct 701829 GTGCAGAGTGGACTCTTCCTGGATATTATAGTCTGACAGAGTGCGGCCATCCTTCAGCTG 701888
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| || | ||| || || || || ||||| || ||| |||| || |||||||| |||||
Sbjct 701889 TTTGCCCGTGAAAATCAGACGCTGCTGGTCAGGTGGACTGCCCTCCTTGTCTTGGATTTT 701948
Query 195057 TTGCTTGACGTTCTCAATGGTGTC 195080
||||| |||||| |||||||
Sbjct 701949 AGCTTTGACATTCTCAGTGGTGTC 701972
>seq23604
Length=314588
Score = 95.1 bits (104), Expect = 3e-14
Identities = 111/149 (74%), Gaps = 1/149 (1%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || ||||||| || || ||||||| | | |||| ||||||||
Sbjct 184074 ACCAGGTGCAGGGTCAACTCTTTCTGGATGCTGTAATCAGAAGGAGTGTGGCCATCTTCC 184133
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || ||||| ||||| || | || || || || || ||||||||||| || |
Sbjct 184134 AGCTGTTTGCCTGCAAAGATGAGCCTCTGATGATCGGG-GGCATGCCTTCTTTATCCTCG 184192
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
|| || ||| |||||||||||||||||
Sbjct 184193 ATCTTGGCCTTCACGTTCTCAATGGTGTC 184221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109045007548871
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |