Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq23530 159 4e-34
seq15277 129 7e-25
seq20974 120 3e-22
seq20687 111 2e-19
>seq23530
Length=2024980
Score = 159 bits (176), Expect = 4e-34
Identities = 274/394 (70%), Gaps = 3/394 (1%)
Strand=Plus/Plus
Query 19153 GCCCAATCAGCCTT-CTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACAT 19211
|||||||| ||||| ||| |||||||| ||| ||||||| | | || || || |
Sbjct 954646 GCCCAATCTGCCTTTCTTCTTTACACAAGGCGTTGTCTCAACGGCGTTGAAGAGGAATTC 954705
Query 19212 ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAAT 19271
| || | | |||||||| || | || | | | |||||||||||| ||||| ||
Sbjct 954706 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAGTGAGGAGACTGTACATTTCAGAATGTAT 954765
Query 19272 ATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACT 19331
||||| || || || || || || || || | | ||||| || ||||| |||||
Sbjct 954766 GTTTTCCATGGCAATTTGGAAGCCATAGAAGTAACGGGCTTCCGTAATCTGAACTTCTTG 954825
Query 19332 ACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAA 19391
| || | || ||||| |||||||| ||||| |||||||| |||||| | || || |
Sbjct 954826 GCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAGCCAG 954885
Query 19392 TACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATATCTT 19450
||| || | | |||| | | || || | | || | | || ||| | | ||| || |
Sbjct 954886 AACACGTGAAGTGAAATATCTCTCCTCAG-GCTTCAGGGCTTCCCAGTGCTGAATGTCCT 954944
Query 19451 TAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCC 19510
| || | || || || ||| ||||||| || |||||||| ||||| |||||| | ||
Sbjct 954945 TGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCCTATACACCTGCC 955004
Query 19511 ATATATCACGATATTGTATAGGAAATATAACAAA 19544
| | |||||| |||| |||||||| || |||||
Sbjct 955005 AAACATCACGGTATTCCATAGGAAAGATGACAAA 955038
>seq15277
Length=4737824
Score = 129 bits (142), Expect = 7e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||||||||| || || | |||||| |||||||| | || ||||||||||||| |||||
Sbjct 3367420 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 3367479
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| |
Sbjct 3367480 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3367539
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 3367540 CTACGACACGTTCTCC 3367555
Score = 95.1 bits (104), Expect = 1e-14
Identities = 111/147 (76%), Gaps = 6/147 (4%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TCAT--TAGAATTCATTACTCCCAT 18668
||| || ||| ||||||| | ||| | ||||||| || | | || ||| ||||||||
Sbjct 3365689 TTAGAAGTCAGCATCCAAGGTAAAGGTATTCTCTGTCGTACTGGA---CATCACTCCCAT 3365745
Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728
| ||||| ||| | ||||| || |||||||| ||||| || || || | ||| |||
Sbjct 3365746 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 3365805
Query 18729 TTCCATAAAATCAAATGGATTTTTTAC 18755
|||||||| ||||||||||||| |||
Sbjct 3365806 CTCCATAAAGTCAAATGGATTTTCTAC 3365832
>seq20974
Length=1049469
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | |||||||| ||||||||||| |||
Sbjct 250905 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 250964
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| ||
Sbjct 250965 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 251024
Query 19105 ACTAGTCTTTCTCC 19118
|| | ||||| ||
Sbjct 251025 ACCACCCTTTCCCC 251038
Score = 86.0 bits (94), Expect = 7e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731
|||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || |||
Sbjct 234127 TTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTC 234186
Query 18732 CATAAAATCAAATGGATTTT 18751
|||||||||||| |||||||
Sbjct 234187 CATAAAATCAAAGGGATTTT 234206
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393
|||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||| |
Sbjct 255286 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 255342
Query 19394 CATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAG 19453
|| ||||||| || || ||||| | | | ||||| | | | |||||| |
Sbjct 255343 TGTGAGAGATAAAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCTTTTG 255402
Query 19454 ATAAATCTAC 19463
||||||| ||
Sbjct 255403 ATAAATCAAC 255412
>seq20687
Length=1308170
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || | || || ||||| ||||| ||||| || ||
Sbjct 999335 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 999276
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| || || ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 999275 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 999216
Query 47448 TTTCTTACTCCATA 47461
|||||||| |||||
Sbjct 999215 TTTCTTACACCATA 999202
Score = 84.2 bits (92), Expect = 2e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || |
Sbjct 1001579 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 1001520
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| || || |||||||| || || ||||| || |||||||| | | ||
Sbjct 1001519 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCGGCTGCCATCTTGAGTATGGTTT 1001460
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
| || | || ||||| || || ||||||| ||| || | ||| || ||
Sbjct 1001459 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 1001411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561892999405320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |