Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq23530 159 4e-34 seq15277 129 7e-25 seq20974 120 3e-22 seq20687 111 2e-19 >seq23530 Length=2024980 Score = 159 bits (176), Expect = 4e-34 Identities = 274/394 (70%), Gaps = 3/394 (1%) Strand=Plus/Plus Query 19153 GCCCAATCAGCCTT-CTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACAT 19211 |||||||| ||||| ||| |||||||| ||| ||||||| | | || || || | Sbjct 954646 GCCCAATCTGCCTTTCTTCTTTACACAAGGCGTTGTCTCAACGGCGTTGAAGAGGAATTC 954705 Query 19212 ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAAT 19271 | || | | |||||||| || | || | | | |||||||||||| ||||| || Sbjct 954706 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAGTGAGGAGACTGTACATTTCAGAATGTAT 954765 Query 19272 ATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACT 19331 ||||| || || || || || || || || | | ||||| || ||||| ||||| Sbjct 954766 GTTTTCCATGGCAATTTGGAAGCCATAGAAGTAACGGGCTTCCGTAATCTGAACTTCTTG 954825 Query 19332 ACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAA 19391 | || | || ||||| |||||||| ||||| |||||||| |||||| | || || | Sbjct 954826 GCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAGCCAG 954885 Query 19392 TACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATATCTT 19450 ||| || | | |||| | | || || | | || | | || ||| | | ||| || | Sbjct 954886 AACACGTGAAGTGAAATATCTCTCCTCAG-GCTTCAGGGCTTCCCAGTGCTGAATGTCCT 954944 Query 19451 TAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCC 19510 | || | || || || ||| ||||||| || |||||||| ||||| |||||| | || Sbjct 954945 TGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCCTATACACCTGCC 955004 Query 19511 ATATATCACGATATTGTATAGGAAATATAACAAA 19544 | | |||||| |||| |||||||| || ||||| Sbjct 955005 AAACATCACGGTATTCCATAGGAAAGATGACAAA 955038 >seq15277 Length=4737824 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||| |||||||| | || ||||||||||||| ||||| Sbjct 3367420 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 3367479 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 3367480 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3367539 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 3367540 CTACGACACGTTCTCC 3367555 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TCAT--TAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||| | ||||||| || | | || ||| |||||||| Sbjct 3365689 TTAGAAGTCAGCATCCAAGGTAAAGGTATTCTCTGTCGTACTGGA---CATCACTCCCAT 3365745 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 3365746 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 3365805 Query 18729 TTCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 3365806 CTCCATAAAGTCAAATGGATTTTCTAC 3365832 >seq20974 Length=1049469 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| ||||||||||| ||| Sbjct 250905 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 250964 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 250965 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 251024 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 251025 ACCACCCTTTCCCC 251038 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 |||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || ||| Sbjct 234127 TTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTC 234186 Query 18732 CATAAAATCAAATGGATTTT 18751 |||||||||||| ||||||| Sbjct 234187 CATAAAATCAAAGGGATTTT 234206 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393 |||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||| | Sbjct 255286 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 255342 Query 19394 CATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAG 19453 || ||||||| || || ||||| | | | ||||| | | | |||||| | Sbjct 255343 TGTGAGAGATAAAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCTTTTG 255402 Query 19454 ATAAATCTAC 19463 ||||||| || Sbjct 255403 ATAAATCAAC 255412 >seq20687 Length=1308170 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || ||||| ||||| ||||| || || Sbjct 999335 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 999276 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| || || ||||||||||| || |||||||| | |||| | ||| || Sbjct 999275 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 999216 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 999215 TTTCTTACACCATA 999202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 1001579 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 1001520 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || || ||||| || |||||||| | | || Sbjct 1001519 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCGGCTGCCATCTTGAGTATGGTTT 1001460 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||||| ||| || | ||| || || Sbjct 1001459 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 1001411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561892999405320