Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq18064 127 3e-24 seq16125 86.0 8e-12 >seq18064 Length=419078 Score = 127 bits (140), Expect = 3e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | || || | ||||| | || |||| | ||| ||| ||| ||||| Sbjct 8748 ACTGAGGAACTTACAAGTTGTCCCTCACACTAAATGGTCTAAAAATAGGACCTGTGAGAT 8807 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| |||||||| ||||| ||| |||| ||||| || | | |||| ||| ||| || Sbjct 8808 CCACCTGACCTGCTCTGTGGAGAATCCAAATGATAATGTATTATTCAGGTGGCAGGTCTC 8867 Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386 || || || |||| | | || | |||||||| | |||||||||||||| || || Sbjct 8868 AGGAAACACACTTCAAAGTGAAGCAAACCTCACTATCTCCTGGGACCCCAAGAGTTTCAA 8927 Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446 ||| ||| |||||| ||| | || || || |||| |||||| || ||| | ||||| Sbjct 8928 TGAAGAGACCTACACCTGCGTAGCTGAGAATCCTGTCAGCAATTCATCCTTCTCTGTCTC 8987 Query 2447 GGCCCAGA 2454 | ||||| Sbjct 8988 TGTCCAGA 8995 Score = 113 bits (124), Expect = 6e-20 Identities = 220/323 (68%), Gaps = 13/323 (4%) Strand=Plus/Plus Query 1881 TCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACACTG 1940 || ||||||| ||| ||||| ||||| ||||| ||||| || |||||||| ||||||| Sbjct 5263 TCACAAACCATCTCAACCCCACTGATTGTGAACGGGGTCCTGGGGGAGTCTATAACACTT 5322 Query 1941 CCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGCACC 2000 ||||| | ||||| | || |||||||||| |||||||||||||| | || || || Sbjct 5323 ACCCTGAAGTTTCCTGTGGAAGAGAAGATCACGTCCATCACCTGGCTTCATAATGGAACA 5382 Query 2001 TCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAATCCG 2060 || | | ||| || ||| | || || | | | | | || | || Sbjct 5383 TCTACCATCTTCAT---------AGAGCCAAATAGAGCACTAAACATGGTGACTGACCCA 5433 Query 2061 AAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTAGAG 2120 || | | || ||| | || |||| ||||||||||| | || || |||||||| | Sbjct 5434 AAGCGGAAAAATCGATTGAATGTCACAGAGTCCTACTCCTTGCAGCTCAGCAACCTGACG 5493 Query 2121 ATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAAC-GTTT- 2178 |||| |||||| || ||||| |||| ||| || | |||| | || || |||| Sbjct 5494 ATGGCAGACACAGGACTTTACAGCGCCCAGATAACCACACTGACCTC--TTCACTGTTTA 5551 Query 2179 CCAGCTACACGCTGAGGATCTTC 2201 |||| || |||||||||||| Sbjct 5552 CCAGTTATGATCTGAGGATCTTC 5574 >seq16125 Length=3410937 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || | || |||||| ||||| |||| ||||| ||||| || || ||||| ||||| Sbjct 3346999 GTTTCACGAATCAGCTCAACCCCATTGATAGTGAACGGGGTCCTGGGAGAGTCTGTAACT 3346940 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTG 1984 || ||||| | ||||| | || |||||||||| ||||||||||| Sbjct 3346939 CTTACCCTGAAGTTTCCTGTGGAAGAGAAGATCACATCCATCACCTG 3346893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629041610313480