Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_016448.1
Length=196691
Score E
Sequences producing significant alignments: (Bits) Value
seq18064 127 3e-24
seq16125 86.0 8e-12
>seq18064
Length=419078
Score = 127 bits (140), Expect = 3e-24
Identities = 177/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266
||||| |||| | || || | ||||| | || |||| | ||| ||| ||| |||||
Sbjct 8748 ACTGAGGAACTTACAAGTTGTCCCTCACACTAAATGGTCTAAAAATAGGACCTGTGAGAT 8807
Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326
||| |||||||| ||||| ||| |||| ||||| || | | |||| ||| ||| ||
Sbjct 8808 CCACCTGACCTGCTCTGTGGAGAATCCAAATGATAATGTATTATTCAGGTGGCAGGTCTC 8867
Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386
|| || || |||| | | || | |||||||| | |||||||||||||| || ||
Sbjct 8868 AGGAAACACACTTCAAAGTGAAGCAAACCTCACTATCTCCTGGGACCCCAAGAGTTTCAA 8927
Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446
||| ||| |||||| ||| | || || || |||| |||||| || ||| | |||||
Sbjct 8928 TGAAGAGACCTACACCTGCGTAGCTGAGAATCCTGTCAGCAATTCATCCTTCTCTGTCTC 8987
Query 2447 GGCCCAGA 2454
| |||||
Sbjct 8988 TGTCCAGA 8995
Score = 113 bits (124), Expect = 6e-20
Identities = 220/323 (68%), Gaps = 13/323 (4%)
Strand=Plus/Plus
Query 1881 TCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACACTG 1940
|| ||||||| ||| ||||| ||||| ||||| ||||| || |||||||| |||||||
Sbjct 5263 TCACAAACCATCTCAACCCCACTGATTGTGAACGGGGTCCTGGGGGAGTCTATAACACTT 5322
Query 1941 CCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGCACC 2000
||||| | ||||| | || |||||||||| |||||||||||||| | || || ||
Sbjct 5323 ACCCTGAAGTTTCCTGTGGAAGAGAAGATCACGTCCATCACCTGGCTTCATAATGGAACA 5382
Query 2001 TCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAATCCG 2060
|| | | ||| || ||| | || || | | | | | || | ||
Sbjct 5383 TCTACCATCTTCAT---------AGAGCCAAATAGAGCACTAAACATGGTGACTGACCCA 5433
Query 2061 AAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTAGAG 2120
|| | | || ||| | || |||| ||||||||||| | || || |||||||| |
Sbjct 5434 AAGCGGAAAAATCGATTGAATGTCACAGAGTCCTACTCCTTGCAGCTCAGCAACCTGACG 5493
Query 2121 ATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAAC-GTTT- 2178
|||| |||||| || ||||| |||| ||| || | |||| | || || ||||
Sbjct 5494 ATGGCAGACACAGGACTTTACAGCGCCCAGATAACCACACTGACCTC--TTCACTGTTTA 5551
Query 2179 CCAGCTACACGCTGAGGATCTTC 2201
|||| || ||||||||||||
Sbjct 5552 CCAGTTATGATCTGAGGATCTTC 5574
>seq16125
Length=3410937
Score = 86.0 bits (94), Expect = 8e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || | || |||||| ||||| |||| ||||| ||||| || || ||||| |||||
Sbjct 3346999 GTTTCACGAATCAGCTCAACCCCATTGATAGTGAACGGGGTCCTGGGAGAGTCTGTAACT 3346940
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTG 1984
|| ||||| | ||||| | || |||||||||| |||||||||||
Sbjct 3346939 CTTACCCTGAAGTTTCCTGTGGAAGAGAAGATCACATCCATCACCTG 3346893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629041610313480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |