Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq4948 203 8e-48 seq4096 87.8 4e-13 seq9311 84.2 5e-12 >seq4948 Length=1101 Score = 203 bits (224), Expect = 8e-48 Identities = 232/312 (74%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 36091 CAGGCGCTCGGAAGGCTCAAGACGGGCCAGATGAATAAAACCGAATCAGCTTACTGCCAG 36150 || |||||||| ||||||| || ||| ||||||| || |||||| | || ||| || Sbjct 216 CAAGCGCTCGGCCGGCTCAAAACCGGCGAGATGAACAAGACCGAAGCGGCGTACATGGAG 275 Query 36151 CACCTTGAGCTGCGTAAGCACGCAGGGGAAATCGCCTGGTACCGGTTCGAAGGTATCAAG 36210 |||| | || || || ||| | ||||| |||| | ||||||||| |||||| Sbjct 276 TACCTGAAAGACCGCCAGTTCGTTGGGCACATCGCATGGTTCAAGTTCGAAGGGATCAAG 335 Query 36211 CTGCGCCTGGCTGATAACACGTTCTACACGCCGGACTTCGCAGTGATGCTAACCAGTGGT 36270 |||||||| ||||| ||||||||||||||||| |||||||| || ||||| | || Sbjct 336 CTGCGCCTCGCTGACAACACGTTCTACACGCCCGACTTCGCCGTAATGCTCGCTGACGGC 395 Query 36271 GAGATGGAACTGCACGAGGTGAAAGGATTCTGGACCGACGACGCCAGGGTGAAAACCAAA 36330 | ||||| |||||||||| || || ||||||||||| ||||||||||||||||||||| Sbjct 396 GCCATGGAGTTGCACGAGGTCAAGGGCTTCTGGACCGATGACGCCAGGGTGAAAACCAAA 455 Query 36331 GTCGCAGCAGACCAGTACCCGTTTCGCATCATCGGGGTAACGGTTAAGCCAAAGAAAGCG 36390 | ||| | || ||| ||||| | ||| ||| || || | ||| | || || | Sbjct 456 GCCGCGCCCAGCCTGTATCCGTTCCAGATCGTCGCAGTCACTGCCAAGACCAAAAAGTCT 515 Query 36391 GGTGGCGGCTGG 36402 || ||||||||| Sbjct 516 GGCGGCGGCTGG 527 >seq4096 Length=1707 Score = 87.8 bits (96), Expect = 4e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2825 CAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCCAACTGAGCTA 2882 ||||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||| Sbjct 1572 CAGGATTCGAACCTGTGACCATCCGCTTAGAAGGCGGATGCTCTATCCAACTGAGCTA 1515 >seq9311 Length=16340 Score = 84.2 bits (92), Expect = 5e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2824 GCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCCAACTGAGCTA 2882 |||||| ||||||||||| ||| ||||||||||||||| ||||||||||| |||||||| Sbjct 3971 GCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTA 3913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123622096485276