Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq6053 199 1e-46 seq6890 174 5e-39 seq15544 107 6e-19 seq9311 86.0 2e-12 seq7520 80.6 8e-11 >seq6053 Length=4391 Score = 199 bits (220), Expect = 1e-46 Identities = 207/270 (77%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| || || | || ||||||||||||||||| ||||||||||| |||||||| || || Sbjct 795 CCCGGTCATTGCCCTCTCGCAGCTCAACCGCTCTCTGGAGCAGCGCCCGAACAAACGCCC 736 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 | ||| || ||| |||| || ||||| || ||||||||||||||||| || |||||||| Sbjct 735 GGTGAACTCCGACTTGCGTGAATCCGGTGCAATCGAGCAGGACGCCGACGTCATCATGTT 676 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 |||||||||||||||||| || ||||| || ||| || || |||||||| || | || Sbjct 675 CGTGTACCGCGACGAGGTGTATCACCCCGAAACCGAGCACAAAGGCGTGGCGGAAATCAT 616 Query 21493 CATCGCGAAGCACCGCAACGGCGAGCCAA---GCACTGTTCGGTGCGCGTTCCTGGGTAA 21549 ||||| || || || ||||| ||||| || ||| || |||||| | || || Sbjct 615 CATCGGCAAACAGCGTAACGG---GCCAATTGGCTTTGTGCGCCTGGCGTTCATCGGCAA 559 Query 21550 GTACTCGCGATTCGAGCAGCTCGCTCCGGG 21579 |||| | || |||||| | | || ||||| Sbjct 558 GTACACCCGTTTCGAGAACTTGGCGCCGGG 529 >seq6890 Length=6377 Score = 174 bits (192), Expect = 5e-39 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| ||| ||| |||||||||||||| ||||| ||||| || ||||||||||| || Sbjct 4824 CCCAGTGGTCGCGCTATCGCAGCTCAACCGATCCCTAGAGCAACGTCCGAACAAGCGCCC 4883 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 ||| | || ||| | || || ||||| || ||||| |||||||| || || |||||||| Sbjct 4884 GATCAACTCAGACTTACGGGAATCCGGAGCAATCGAACAGGACGCAGACGTCATCATGTT 4943 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 ||| |||||||||||||| || |||||| | ||| | ||| ||| | || ||| | || Sbjct 4944 CGTTTACCGCGACGAGGTGTATCACCCGCAGACCGAATACAAAGGCATTGCCGAGATCAT 5003 Query 21493 CATCGCGAAGCACCGCAACGGCGAGCCAAGCACTGTTCGGTGCGCGTTC 21541 ||||| ||| ||||||||| | |||| ||||| ||||||| Sbjct 5004 CATCGGCAAGGCACGCAACGGCCCTACTGGCACCGTTCGAACCGCGTTC 5052 >seq15544 Length=893 Score = 107 bits (118), Expect = 6e-19 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | | |||| ||||||||||| |||||||| || || || |||||||| || Sbjct 782 CCCGGTGGTGGCGTTGTCCCAGCTCAACCGTTCCCTGGAACAACGTCCCAACAAGCGTCC 841 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTG 21424 | ||| || ||| |||| || ||||| |||||||||||||||||||| ||| Sbjct 842 GGTGAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGGACGCCGACGTG 893 >seq9311 Length=16340 Score = 86.0 bits (94), Expect = 2e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCAT 47595 || ||||||||||||||||| |||||| || ||||||||||||||| |||||||||||| Sbjct 4177 ACTGGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCAT 4236 Query 47596 ACTTC 47600 |||| Sbjct 4237 GCTTC 4241 >seq7520 Length=222 Score = 80.6 bits (88), Expect = 8e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 45094 GCCATGCCCATCACTGAGCAGCAACTGCTGCGAATTCTCCCGAACGCCGGCCCTCGAGCC 45153 |||||||| || || |||||||||||||||| || |||||||||||||||| ||| Sbjct 134 GCCATGCCTATTACCGAGCAGCAACTGCTGCAGATACTCCCGAACGCCGGCCGCAATGCC 75 Query 45154 GGCGTTTTTGTT 45165 |||||||||||| Sbjct 74 GGCGTTTTTGTT 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157053099185882