Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_016762.1
Length=49135
Score E
Sequences producing significant alignments: (Bits) Value
seq6053 199 1e-46
seq6890 174 5e-39
seq15544 107 6e-19
seq9311 86.0 2e-12
seq7520 80.6 8e-11
>seq6053
Length=4391
Score = 199 bits (220), Expect = 1e-46
Identities = 207/270 (77%), Gaps = 6/270 (2%)
Strand=Plus/Minus
Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372
||| || || | || ||||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 795 CCCGGTCATTGCCCTCTCGCAGCTCAACCGCTCTCTGGAGCAGCGCCCGAACAAACGCCC 736
Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432
| ||| || ||| |||| || ||||| || ||||||||||||||||| || ||||||||
Sbjct 735 GGTGAACTCCGACTTGCGTGAATCCGGTGCAATCGAGCAGGACGCCGACGTCATCATGTT 676
Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492
|||||||||||||||||| || ||||| || ||| || || |||||||| || | ||
Sbjct 675 CGTGTACCGCGACGAGGTGTATCACCCCGAAACCGAGCACAAAGGCGTGGCGGAAATCAT 616
Query 21493 CATCGCGAAGCACCGCAACGGCGAGCCAA---GCACTGTTCGGTGCGCGTTCCTGGGTAA 21549
||||| || || || ||||| ||||| || ||| || |||||| | || ||
Sbjct 615 CATCGGCAAACAGCGTAACGG---GCCAATTGGCTTTGTGCGCCTGGCGTTCATCGGCAA 559
Query 21550 GTACTCGCGATTCGAGCAGCTCGCTCCGGG 21579
|||| | || |||||| | | || |||||
Sbjct 558 GTACACCCGTTTCGAGAACTTGGCGCCGGG 529
>seq6890
Length=6377
Score = 174 bits (192), Expect = 5e-39
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372
||| ||| ||| ||| |||||||||||||| ||||| ||||| || ||||||||||| ||
Sbjct 4824 CCCAGTGGTCGCGCTATCGCAGCTCAACCGATCCCTAGAGCAACGTCCGAACAAGCGCCC 4883
Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432
||| | || ||| | || || ||||| || ||||| |||||||| || || ||||||||
Sbjct 4884 GATCAACTCAGACTTACGGGAATCCGGAGCAATCGAACAGGACGCAGACGTCATCATGTT 4943
Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492
||| |||||||||||||| || |||||| | ||| | ||| ||| | || ||| | ||
Sbjct 4944 CGTTTACCGCGACGAGGTGTATCACCCGCAGACCGAATACAAAGGCATTGCCGAGATCAT 5003
Query 21493 CATCGCGAAGCACCGCAACGGCGAGCCAAGCACTGTTCGGTGCGCGTTC 21541
||||| ||| ||||||||| | |||| ||||| |||||||
Sbjct 5004 CATCGGCAAGGCACGCAACGGCCCTACTGGCACCGTTCGAACCGCGTTC 5052
>seq15544
Length=893
Score = 107 bits (118), Expect = 6e-19
Identities = 91/112 (81%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372
||| ||| | | | |||| ||||||||||| |||||||| || || || |||||||| ||
Sbjct 782 CCCGGTGGTGGCGTTGTCCCAGCTCAACCGTTCCCTGGAACAACGTCCCAACAAGCGTCC 841
Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTG 21424
| ||| || ||| |||| || ||||| |||||||||||||||||||| |||
Sbjct 842 GGTGAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGGACGCCGACGTG 893
>seq9311
Length=16340
Score = 86.0 bits (94), Expect = 2e-12
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCAT 47595
|| ||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||
Sbjct 4177 ACTGGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCAT 4236
Query 47596 ACTTC 47600
||||
Sbjct 4237 GCTTC 4241
>seq7520
Length=222
Score = 80.6 bits (88), Expect = 8e-11
Identities = 61/72 (85%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 45094 GCCATGCCCATCACTGAGCAGCAACTGCTGCGAATTCTCCCGAACGCCGGCCCTCGAGCC 45153
|||||||| || || |||||||||||||||| || |||||||||||||||| |||
Sbjct 134 GCCATGCCTATTACCGAGCAGCAACTGCTGCAGATACTCCCGAACGCCGGCCGCAATGCC 75
Query 45154 GGCGTTTTTGTT 45165
||||||||||||
Sbjct 74 GGCGTTTTTGTT 63
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 157053099185882
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |