Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq17408 156 3e-33
seq26173 138 9e-28
seq27490 102 7e-17
seq4873 95.1 1e-14
>seq17408
Length=748846
Score = 156 bits (172), Expect = 3e-33
Identities = 133/164 (81%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||
Sbjct 535766 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 535825
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || |||||||| || ||||||||||| ||||| || || ||||| |||| |
Sbjct 535826 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 535885
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||||||||| || | || |||||||||||| || ||||||||
Sbjct 535886 ACGTAAAACTGGCAAAGGGCGTGGCACGGAGGTAGGGCCATGAG 535929
Score = 87.8 bits (96), Expect = 1e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| || || || |||||||||||||| || || || || || || | ||
Sbjct 539033 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 539092
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
|| ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| |
Sbjct 539093 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCAGC 539152
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||||| || || ||||| || ||||| || | ||||||||| ||
Sbjct 539153 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 539200
>seq26173
Length=4939203
Score = 138 bits (152), Expect = 9e-28
Identities = 336/501 (67%), Gaps = 15/501 (3%)
Strand=Plus/Minus
Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850
||||| | |||||| | || |||||||||||| | ||| || ||||||| |||||
Sbjct 2187561 AGCTGCATTTTCAGCAGCTCAGTGTGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 2187502
Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910
||| | || || || | || || |||| ||| || |||||||| ||||| || | |||
Sbjct 2187501 ACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAG 2187442
Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970
||||||||||| |||| || || || ||| |||| || ||| ||||||| ||||| ||
Sbjct 2187441 CTGGCGATGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACTTCTGGTACAGCTG-CAG 2187383
Query 29971 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAA-------G 30023
|| || || || |||||| || || || | || |||||| | || | |
Sbjct 2187382 GACAG-TCATGGTTCACCACGTAGAAGTGGCAAAGGGCATGGCACAGGGGCAGGGTGGTG 2187324
Query 30024 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 30083
| ||||| | ||||| | ||||| || || | ||||| | |||||||| ||
Sbjct 2187323 GGGTATGAGAGGAAGATCTTT-CGATTCCAAGCACATAGAATGATTCTTCTGTCTTCAGG 2187265
Query 30084 GTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC 30143
|||| | |||| ||| | | |||||||| || || | || || || ||
Sbjct 2187264 GTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCTGCTCCTTGACCTGAATAAAT 2187205
Query 30144 TGCCCT-CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202
| | || || |||| || || | ||| |||||||||| || | || || | |
Sbjct 2187204 TCAAATCCACATCTTTGTATTCGGCCACCAAAAGCCTCCACTGAAAGCTATAAACTAGGC 2187145
Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGA-AG-CCCCTCTTGTCCAAAAAGTCTCTGGAACC 30260
| | || || |||| || || | || || || ||||||| ||||||| ||| |
Sbjct 2187144 CTAAATCCCCTTCTT--CTTTGGTGGAGAGTACCAGGCTGTCCAAGAAGTCTCGGGACCT 2187087
Query 30261 GTTGGCGTCCCAGATCTTTAC 30281
|| ||| |||||||| || ||
Sbjct 2187086 GTAGGCATCCCAGATTTTCAC 2187066
>seq27490
Length=5292111
Score = 102 bits (112), Expect = 7e-17
Identities = 166/235 (71%), Gaps = 7/235 (3%)
Strand=Plus/Plus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| || || || || || || || ||||| |||| || || ||||| |
Sbjct 4483402 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 4483461
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| ||||| |||||| || || ||||||||||| || || |||||||| |||||| ||
Sbjct 4483462 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTTTTCCTACCCATAATCACCGAATT 4483521
Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259
||| || ||| ||||||| || | ||||| | | || | | | || || |
Sbjct 4483522 CTGTTTACCTTCTCCTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCGTTCCT 4483581
Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 112313
|| || ||| |||| ||||| || ||||| || |||||||||||| |||||
Sbjct 4483582 GAG---CG-AGG--GCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG 4483630
>seq4873
Length=1786275
Score = 95.1 bits (104), Expect = 1e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||| ||| || || || || || || || ||||| |||| || || ||||| |
Sbjct 1550174 ATGAGGTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 1550233
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| |
Sbjct 1550234 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATA 1550293
Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 112231
||| || ||| ||||||| || | |||||
Sbjct 1550294 CTGTTTACCTTCTCCTGAAGAAGTTGTGGTCA 1550325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408464648430749
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |