Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq2883 172 1e-37 seq18056 159 6e-34 seq2733 96.9 6e-15 >seq2883 Length=1484 Score = 172 bits (190), Expect = 1e-37 Identities = 297/424 (70%), Gaps = 13/424 (3%) Strand=Plus/Plus Query 22951 CGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAA 23010 ||||| |||||| ||||| || | ||||| || | | |||||| || ||||| Sbjct 126 CGGTCCTTGTAGGACACTTCACAGGCCTCATCGGACTGCAGGAACAGCATCTGTGCCACG 185 Query 23011 CCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTG-TGGTATTGGAAAACTCCAGAGTAAG 23069 |||||| |||||||| ||||| | |||| |||| ||||| || ||||| || | Sbjct 186 CCTTCGTTGGCGTAGATTTTCGCCGG-CAAGGTGGTGGTGTTGGAGAATTCCAGGGTGAC 244 Query 23070 CGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATA 23129 ||||| ||| || || || ||||||||||| || ||||| |||||||| || ||||| Sbjct 245 GTGGCCTTCCCACTCAGGCTCAAGCGGCGTGACATTGACGATAATGCCGCAGCGGGCATA 304 Query 23130 CGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGT 23189 || ||| || |||||||| | ||||| || || || |||| ||| || Sbjct 305 GGTGCTTTTACCCAGGCAGATGGTCAGCACGTCGCGAGGGATACGGAAGAACTCCACGGT 364 Query 23190 GTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGCT 23248 | ||||| ||||| ||| ||||| ||||| || | | | | ||| ||| Sbjct 365 GCGCGCCAGGGCGAAGGAGTTGGGCGGGATGATGCACACGTCG--CTCTTG--ACG---- 416 Query 23249 TCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGG 23308 ||| ||||| | | |||| ||| || || |||||||| | ||| ||| | ||||| Sbjct 417 TCG--ACGAAGCTCTTTTCGTCGAAGTTTTTCGGATCGACGATCGCCGAATTGATGTTGG 474 Query 23309 TGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGGAAACACCGTAGG 23368 |||| ||||||||||| | ||||||| | |||||||| ||||||||||| ||||| | Sbjct 475 TGAACACCTTGAATTCATCGGCGCAACGCACGTCGTAGCCATAGCTGGAAACGCCGTACG 534 Query 23369 GAAT 23372 ||| Sbjct 535 AAAT 538 >seq18056 Length=8613 Score = 159 bits (176), Expect = 6e-34 Identities = 288/416 (69%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 22950 GCGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAA-CAGAATTTGTGCGC 23008 |||||| |||||| ||||| || || || || | | ||| ||| || || || | Sbjct 8305 GCGGTCCCGGTAGGACACTTCACATGGCTCGTCCGACTGCAGGAAACAGCATCTGCGCCC 8246 Query 23009 AACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAGTAA 23068 |||||| ||||||||| ||||| | ||||| ||||| |||||||| || | Sbjct 8245 CCCCTTCGTTGGCGTAGATCTTGGCCGGCAACGTGGTGGTGTTGGAGAACTCCAGCGTCA 8186 Query 23069 GCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCAT 23128 ||||| |||||| || |||||||| || ||||| |||||||||||||||||||||| Sbjct 8185 CGTGGCCTTCCCATTCAGGCTCCAGCGGGGTCACGTTGACGATGATGCCGCAACGCGCAT 8126 Query 23129 ACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCG 23188 | || ||||| |||||||| | ||||| ||||| ||| ||||| ||| | Sbjct 8125 AGGTGCTCTTGCCCAGGCAGATGGTCAGCACGTCGCGCGGGATGCGGAAGTACTCCACGG 8066 Query 23189 TGTTTGCCAGTGCGAAACTGTTCGGCGGAATGATCAGGCCTTGGCCGTTTGGAACGTGCT 23248 || ||||||||| || ||| ||||| ||||| | | | | | | || || Sbjct 8065 TGCGTGCCAGTGCAAAGGAGTTGGGCGGGATGAT--GCACACGTCGCTCTTGA---TG-- 8013 Query 23249 TCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGG 23308 ||| ||||| || | | ||| ||||| || ||||| || || | |||| Sbjct 8012 TCG--ACGAAGCTGCCGGCATCGAAGTTCTTCGGGTCGACGGTGGCCGAGTTGATATTGG 7955 Query 23309 TGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGGAAACACCG 23364 | || ||||||||||||| |||| || | |||||||||||||| ||||| ||| Sbjct 7954 TAAAGACCTTGAATTCGTCGGCGCAGCGCACGTCGTAGCCGTAGCTCGAAACGCCG 7899 >seq2733 Length=8656 Score = 96.9 bits (106), Expect = 6e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 22960 TAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCA 23019 || ||| ||| ||| |||||||| |||||| ||||| || || || ||| || || Sbjct 7832 TAAGAAGTTTCACACACTTCATCACTTTCAAAAAACAGCATCTGAGCAACACCCTCACCT 7773 Query 23020 GCGTAGATCAGTGCCGGGC--TTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTT 23077 || || || | || || ||||| ||||| ||||| || | |||| ||||| Sbjct 7772 GCATAAATACGCGCTGGCAAATTGGTA--GTATTTGAAAATTCTAACGTAACATGGCCTT 7715 Query 23078 TCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATT 23137 ||| ||||| |||||||||||||| || || || || ||||| || ||||| || |||| Sbjct 7714 CCCACTCTGGCTCCAGCGGCGTGACATTAACAATAATACCGCAGCGTGCATAGGTGGATT 7655 Query 23138 TGCCGAGGCAGATAACTAATACGTCACGCGGAAT 23171 | || || || || || ||| | || ||||| Sbjct 7654 TACCCAGACAAATTGTTAGTACATTGCGTGGAAT 7621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897249002597040