Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_017972.1
Length=280538
Score E
Sequences producing significant alignments: (Bits) Value
seq2883 172 1e-37
seq18056 159 6e-34
seq2733 96.9 6e-15
>seq2883
Length=1484
Score = 172 bits (190), Expect = 1e-37
Identities = 297/424 (70%), Gaps = 13/424 (3%)
Strand=Plus/Plus
Query 22951 CGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAA 23010
||||| |||||| ||||| || | ||||| || | | |||||| || |||||
Sbjct 126 CGGTCCTTGTAGGACACTTCACAGGCCTCATCGGACTGCAGGAACAGCATCTGTGCCACG 185
Query 23011 CCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTG-TGGTATTGGAAAACTCCAGAGTAAG 23069
|||||| |||||||| ||||| | |||| |||| ||||| || ||||| || |
Sbjct 186 CCTTCGTTGGCGTAGATTTTCGCCGG-CAAGGTGGTGGTGTTGGAGAATTCCAGGGTGAC 244
Query 23070 CGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATA 23129
||||| ||| || || || ||||||||||| || ||||| |||||||| || |||||
Sbjct 245 GTGGCCTTCCCACTCAGGCTCAAGCGGCGTGACATTGACGATAATGCCGCAGCGGGCATA 304
Query 23130 CGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGT 23189
|| ||| || |||||||| | ||||| || || || |||| ||| ||
Sbjct 305 GGTGCTTTTACCCAGGCAGATGGTCAGCACGTCGCGAGGGATACGGAAGAACTCCACGGT 364
Query 23190 GTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGCT 23248
| ||||| ||||| ||| ||||| ||||| || | | | | ||| |||
Sbjct 365 GCGCGCCAGGGCGAAGGAGTTGGGCGGGATGATGCACACGTCG--CTCTTG--ACG---- 416
Query 23249 TCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGG 23308
||| ||||| | | |||| ||| || || |||||||| | ||| ||| | |||||
Sbjct 417 TCG--ACGAAGCTCTTTTCGTCGAAGTTTTTCGGATCGACGATCGCCGAATTGATGTTGG 474
Query 23309 TGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGGAAACACCGTAGG 23368
|||| ||||||||||| | ||||||| | |||||||| ||||||||||| ||||| |
Sbjct 475 TGAACACCTTGAATTCATCGGCGCAACGCACGTCGTAGCCATAGCTGGAAACGCCGTACG 534
Query 23369 GAAT 23372
|||
Sbjct 535 AAAT 538
>seq18056
Length=8613
Score = 159 bits (176), Expect = 6e-34
Identities = 288/416 (69%), Gaps = 10/416 (2%)
Strand=Plus/Minus
Query 22950 GCGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAA-CAGAATTTGTGCGC 23008
|||||| |||||| ||||| || || || || | | ||| ||| || || || |
Sbjct 8305 GCGGTCCCGGTAGGACACTTCACATGGCTCGTCCGACTGCAGGAAACAGCATCTGCGCCC 8246
Query 23009 AACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAGTAA 23068
|||||| ||||||||| ||||| | ||||| ||||| |||||||| || |
Sbjct 8245 CCCCTTCGTTGGCGTAGATCTTGGCCGGCAACGTGGTGGTGTTGGAGAACTCCAGCGTCA 8186
Query 23069 GCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCAT 23128
||||| |||||| || |||||||| || ||||| ||||||||||||||||||||||
Sbjct 8185 CGTGGCCTTCCCATTCAGGCTCCAGCGGGGTCACGTTGACGATGATGCCGCAACGCGCAT 8126
Query 23129 ACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCG 23188
| || ||||| |||||||| | ||||| ||||| ||| ||||| ||| |
Sbjct 8125 AGGTGCTCTTGCCCAGGCAGATGGTCAGCACGTCGCGCGGGATGCGGAAGTACTCCACGG 8066
Query 23189 TGTTTGCCAGTGCGAAACTGTTCGGCGGAATGATCAGGCCTTGGCCGTTTGGAACGTGCT 23248
|| ||||||||| || ||| ||||| ||||| | | | | | | || ||
Sbjct 8065 TGCGTGCCAGTGCAAAGGAGTTGGGCGGGATGAT--GCACACGTCGCTCTTGA---TG-- 8013
Query 23249 TCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGG 23308
||| ||||| || | | ||| ||||| || ||||| || || | ||||
Sbjct 8012 TCG--ACGAAGCTGCCGGCATCGAAGTTCTTCGGGTCGACGGTGGCCGAGTTGATATTGG 7955
Query 23309 TGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGGAAACACCG 23364
| || ||||||||||||| |||| || | |||||||||||||| ||||| |||
Sbjct 7954 TAAAGACCTTGAATTCGTCGGCGCAGCGCACGTCGTAGCCGTAGCTCGAAACGCCG 7899
>seq2733
Length=8656
Score = 96.9 bits (106), Expect = 6e-15
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 22960 TAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCA 23019
|| ||| ||| ||| |||||||| |||||| ||||| || || || ||| || ||
Sbjct 7832 TAAGAAGTTTCACACACTTCATCACTTTCAAAAAACAGCATCTGAGCAACACCCTCACCT 7773
Query 23020 GCGTAGATCAGTGCCGGGC--TTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTT 23077
|| || || | || || ||||| ||||| ||||| || | |||| |||||
Sbjct 7772 GCATAAATACGCGCTGGCAAATTGGTA--GTATTTGAAAATTCTAACGTAACATGGCCTT 7715
Query 23078 TCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATT 23137
||| ||||| |||||||||||||| || || || || ||||| || ||||| || ||||
Sbjct 7714 CCCACTCTGGCTCCAGCGGCGTGACATTAACAATAATACCGCAGCGTGCATAGGTGGATT 7655
Query 23138 TGCCGAGGCAGATAACTAATACGTCACGCGGAAT 23171
| || || || || || ||| | || |||||
Sbjct 7654 TACCCAGACAAATTGTTAGTACATTGCGTGGAAT 7621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 897249002597040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |